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SMU robotic arm is helping Beaumont boy make a remarkable recovery after polio-like condition

DALLAS (SMU) – A robotic arm built by mechanical engineering professor Edmond Richer at SMU’s Lyle School of Engineering is delivering a stronger future for young Braden Scott, helping re-create connections between his brain and muscles.

Braden was 5 years old when he came down with acute flaccid myelitis, a rare condition that affects the nervous system.

Watch KXAS-NBC 5’s story to learn more.

About SMU

SMU is the nationally ranked global research university in the dynamic city of Dallas. SMU’s alumni, faculty and nearly 12,000 students in eight degree-granting schools demonstrate an entrepreneurial spirit as they lead change in their professions, communities and the world.

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Is it possible to change your personality? Yes, if you’re willing to do the work involved

DALLAS (SMU) – Want to be more outgoing?  Or less uptight?

In an interview with Fox4ward’s Dan Godwin, SMU psychology professor Nathan Hudson said that it is possible for people to change aspects of their personality.  But it will require some work on your part.

You can view the video here or on Hudson’s website. Forbes and Psychology Today also did a piece on the research.

 

About SMU

SMU is the nationally ranked global research university in the dynamic city of Dallas. SMU’s alumni, faculty and nearly 12,000 students in seven degree-granting schools demonstrate an entrepreneurial spirit as they lead change in their professions, community and the world.

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Virtual reality brings cervical cancer surgery training to physicians

Too often, women in developing countries die of cervical cancer because there aren’t enough surgeons trained to perform a lifesaving surgery.

But a low-cost surgery simulation developed by a team of SMU, UNC School of Medicine and King’s College London researchers has the potential to change that.

Using widely available technology and Oculus Rift hardware—similar to what is used in popular games like “Lone Echo”—the team created a virtual reality simulation that mirrors what a surgeon would see in real life while performing a radical hysterectomy to remove a woman’s uterus and other parts of her womb.

So surgeons in developing countries can more easily get training on the procedure, potentially saving women’s lives, said Dr. Eric G. Bing, who co-authored a study on the simulation and is a global health professor at Southern Methodist University (SMU).

Watch SMU’s Lifesaving VR video to learn more.

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SMU Research with Impact

SMU’s faculty and students join forces as co-creators of knowledge that spans the arts, sciences, engineering, business and the humanities. Students become hands-on contributors to significant discoveries. In collaboration with industry, nonprofit organizations and other institutions, our researchers forge paths to results that can be applied ethically on a local, national and global scale. Powered by the vast potential of data science and high-speed computing, they unlock new insights about critical problems. SMU researchers shape these discoveries into economic opportunities, stronger communities and a better world.

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Mild problem-solving task improves brain function after a concussion, new study suggests

A simple cognitive task as early as four days after a brain injury activates the region that improves memory function, and may guard against developing depression or anxiety

Concern is growing about the danger of sports-related concussions and their long-term impact on athletes. But physicians and healthcare providers acknowledge that the science is evolving, leaving questions about rehabilitation and treatment options.

Currently, guidelines recommend that traumatic brain injury patients get plenty of rest and avoid physical and cognitive activity until symptoms subside.

But a new pilot study looking at athletes with concussions suggests total inactivity may not be the best way to recover after all, say scientists at Southern Methodist University, Dallas, where the research was conducted.

The study found that a simple cognitive task as early as four days after a brain injury activated the region that improves memory function and can guard against two hallmarks of concussion — depression and anxiety.

“Right now, if you have a concussion the directive is to have complete physical and cognitive rest, no activities, no social interaction, to let your brain rest and recover from the energy crisis as a result of the injury,” said SMU physiologist Sushmita Purkayastha, who led the research, which was funded by the Texas Institute for Brain Injury and Repair at UT Southwestern Medical Center, Dallas.

“But what we saw, the student athletes came in on approximately the third day of their concussion and the test was not stressful for them. None of the patients complained about any symptom aggravation as a result of the task. Their parasympathetic nervous system — which regulates automatic responses such as heart rate when the body is at rest — was activated, which is a good sign,” said Purkayastha, an assistant professor in the Department of Applied Physiology and Wellness.

The parasympathetic nervous system is associated with better memory function and implicated in better cardiovascular function. It also helps to regulates stress, depression and anxiety — and those are very common symptoms after a concussion.

“People in the absolute rest phase after concussion often experience depression,” Purkayastha added. “In the case of concussion, cutting people off from their social circle when we say ‘no screen time’ — particularly the young generation with their cell phones and iPads — they will just get more depressed and anxious. So maybe we need to rethink current rehabilitation strategy.”

The new study addresses the lack of research upon which to develop science- and data-based treatment for concussion. The findings emerged when the research team measured variations in heart rate variability among athletes with concussions while responding to simple problem-solving and decision-making tasks.

While we normally think of our heart rate as a steady phenomenon, in actuality the interval varies and is somewhat irregular — and that is desirable and healthy. High heart rate variability is an indicator of sound cardiovascular health. Higher levels of variability indicate that physiological processes are better controlled and functioning as they should, such as during stressful (both physical and challenging mental tasks) or emotional situations.

Concussed athletes normally have lowered heart rate variability.

For the new study, Purkayastha and her team administered a fairly simple cognitive task to athletes with concussions. During the task, the athletes recorded a significant increase in heart rate variability.

The study is the first of its kind to examine heart rate variability in college athletes with concussions during a cognitive task.

The findings suggest that a small measure of brain work could be beneficial, said co-investigator and neuro-rehabilitation specialist Kathleen R. Bell, a physician at UT Southwestern.

“This type of research will change fundamentally the way that patients with sports and other concussions are treated,” said Bell, who works with brain injury patients and is Chair of Physical Medicine and Rehabilitation at UT Southwestern. “Understanding the basic physiology of brain injury and repair is the key to enhancing recovery for our young people after concussion.”

The researchers reported their findings in the peer-reviewed Journal of Head Trauma Rehabilitation, in the article “Reduced resting and increased elevation of heart rate variability with cognitive task performance in concussed athletes.”

Co-authors from SMU Simmons School include Mu Huang and Justin Frantz; Peter F. Davis and Scott L. Davis, from SMU’s Department of Applied Physiology and Wellness; Gilbert Moralez, Texas Health Presbyterian Hospital, Dallas; and Tonia Sabo, UT Southwestern.

Concussion symptom improved with simple brain activity
Volunteer subjects for the study were 46 NCAA Division I and recreational athletes who participate in contact-collision sports. Of those, 23 had a physician-diagnosed sports-related concussion in accordance with NCAA diagnostic criteria. Each of them underwent the research testing within approximately three to four days after their injury.

Not surprisingly, compared to the athletes in the control group who didn’t have concussions, the athletes with concussions entered answers that were largely incorrect.

More importantly, though, the researchers observed a positive physiological response to the task in the form of increased heart rate variability, said Purkayastha.

“It’s true that the concussed group gave wrong answers for the most part. More important, however, is the fact that during the task their heart rate variability improved,” she said. “That was most likely due to the enhancement of their brain activity, which led to better regulation. It seems that engaging in a cognitive task is crucial for recovery.”

Heart rate variability is a normal physiological process of the heart. It makes possible a testing method as noninvasive as taking a patient’s blood pressure, pulse or temperature. In the clinical field, measuring heart rate variability is an increasingly common screening tool to see if involuntary responses in the body are functioning and being regulated properly by the autonomic nervous system.

The parasympathetic is blunted or dampened by concussion
Abnormal fluctuations in heart rate variability are associated with certain conditions before symptoms are otherwise noticeable.

Monitoring heart rate variability measures the normal synchronized contractions of the heart’s atriums and ventricles in response to natural electrical impulses that rhythmically move across the muscles of the heart.

After a concussion, an abnormal and unhealthy decline in heart rate variability is observed in the parasympathetic nervous system, a branch of the autonomic nervous system. The parasympathetic is in effect blunted or dampened after a concussion, said Purkayastha.

As expected, in the current study, heart rate variability was lower among the athletes with concussions than those without.

New findings add evidence suggesting experts rethink rehab
But that changed during the simple cognitive task. For the athletes with concussions, their heart rate variability increased, indicating the parasympathetic nervous system was activated by the task.

Heart rate variability between the concussed and the controls was comparable during the cognitive task, the researchers said in their study.

“This suggests that maybe we need to rethink rehabilitation after someone has a concussion,” Purkayastha said. — Margaret Allen, SMU

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People who deeply grasp the pain or happiness of others also process music differently in the brain

Higher empathy people appear to process music like a pleasurable proxy for a human encounter — in the brain regions for reward, social awareness and regulation of social emotions.

People with higher empathy differ from others in the way their brains process music, according to a study by researchers at Southern Methodist University, Dallas and UCLA.

The researchers found that compared to low empathy people, those with higher empathy process familiar music with greater involvement of the reward system of the brain, as well as in areas responsible for processing social information.

“High-empathy and low-empathy people share a lot in common when listening to music, including roughly equivalent involvement in the regions of the brain related to auditory, emotion, and sensory-motor processing,” said lead author Zachary Wallmark, an assistant professor in the SMU Meadows School of the Arts.

But there is at least one significant difference.

Highly empathic people process familiar music with greater involvement of the brain’s social circuitry, such as the areas activated when feeling empathy for others. They also seem to experience a greater degree of pleasure in listening, as indicated by increased activation of the reward system.

“This may indicate that music is being perceived weakly as a kind of social entity, as an imagined or virtual human presence,” Wallmark said.

Researchers in 2014 reported that about 20 percent of the population is highly empathic. These are people who are especially sensitive and respond strongly to social and emotional stimuli.

The SMU-UCLA study is the first to find evidence supporting a neural account of the music-empathy connection. Also, it is among the first to use functional magnetic resonance imaging (fMRI) to explore how empathy affects the way we perceive music.

The new study indicates that among higher-empathy people, at least, music is not solely a form of artistic expression.

“If music was not related to how we process the social world, then we likely would have seen no significant difference in the brain activation between high-empathy and low-empathy people,” said Wallmark, who is director of the MuSci Lab at SMU, an interdisciplinary research collective that studies — among other things — how music affects the brain.

“This tells us that over and above appreciating music as high art, music is about humans interacting with other humans and trying to understand and communicate with each other,” he said.

This may seem obvious.

“But in our culture we have a whole elaborate system of music education and music thinking that treats music as a sort of disembodied object of aesthetic contemplation,” Wallmark said. “In contrast, the results of our study help explain how music connects us to others. This could have implications for how we understand the function of music in our world, and possibly in our evolutionary past.”

The researchers reported their findings in the peer-reviewed journal Frontiers in Behavioral Neuroscience, in the article “Neurophysiological effects of trait empathy in music listening.”

The co-authors are Choi Deblieck, with the University of Leuven, Belgium, and Marco Iacoboni, UCLA. The research was carried out at the Ahmanson-Lovelace Brain Mapping Center at UCLA.

“The study shows on one hand the power of empathy in modulating music perception, a phenomenon that reminds us of the original roots of the concept of empathy — ‘feeling into’ a piece of art,” said senior author Marco Iacoboni, a neuroscientist at the UCLA Semel Institute for Neuroscience and Human Behavior.

“On the other hand,” Iacoboni said, “the study shows the power of music in triggering the same complex social processes at work in the brain that are at play during human social interactions.”

Comparison of brain scans showed distinctive differences based on empathy
Participants were 20 UCLA undergraduate students. They were each scanned in an MRI machine while listening to excerpts of music that were either familiar or unfamiliar to them, and that they either liked or disliked. The familiar music was selected by participants prior to the scan.

Afterward each person completed a standard questionnaire to assess individual differences in empathy — for example, frequently feeling sympathy for others in distress, or imagining oneself in another’s shoes.

The researchers then did controlled comparisons to see which areas of the brain during music listening are correlated with empathy.

Analysis of the brain scans showed that high empathizers experienced more activity in the dorsal striatum, part of the brain’s reward system, when listening to familiar music, whether they liked the music or not.

The reward system is related to pleasure and other positive emotions. Malfunction of the area can lead to addictive behaviors.

Empathic people process music with involvement of social cognitive circuitry
In addition, the brain scans of higher empathy people in the study also recorded greater activation in medial and lateral areas of the prefrontal cortex that are responsible for processing the social world, and in the temporoparietal junction, which is critical to analyzing and understanding others’ behaviors and intentions.

Typically, those areas of the brain are activated when people are interacting with, or thinking about, other people. Observing their correlation with empathy during music listening might indicate that music to these listeners functions as a proxy for a human encounter.

Beyond analysis of the brain scans, the researchers also looked at purely behavioral data — answers to a survey asking the listeners to rate the music afterward.

Those data also indicated that higher empathy people were more passionate in their musical likes and dislikes, such as showing a stronger preference for unfamiliar music.

Precise neurophysiological relationship between empathy and music is largely unexplored
A large body of research has focused on the cognitive neuroscience of empathy — how we understand and experience the thoughts and emotions of other people. Studies point to a number of areas of the prefrontal, insular, and cingulate cortices as being relevant to what brain scientists refer to as social cognition.

Studies have shown that activation of the social circuitry in the brain varies from individual to individual. People with more empathic personalities show increased activity in those areas when performing socially relevant tasks, including watching a needle penetrating skin, listening to non-verbal vocal sounds, observing emotional facial expressions, or seeing a loved one in pain.

In the field of music psychology, a number of recent studies have suggested that empathy is related to intensity of emotional responses to music, listening style, and musical preferences — for example, empathic people are more likely to enjoy sad music.

“This study contributes to a growing body of evidence,” Wallmark said, “that music processing may piggyback upon cognitive mechanisms that originally evolved to facilitate social interaction.” — Margaret Allen, SMU

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SMU physicist and her students join national laboratories, other universities in high-stakes hunt for elusive dark matter

“One of our major concerns is background particles that can mimic the dark matter signature in our detectors.” — Jodi Cooley

SMU physicist Jodi Cooley is a member of the international scientific team that will use a powerful new tool to understand one of the biggest mysteries of modern physics.

The U.S. Department of Energy has approved funding and start of construction for SuperCDMS SNOLAB, a $34 million experiment designed to detect dark matter.

SuperCDMS will begin operations in the early 2020s to hunt for hypothetical dark matter particles called weakly interacting massive particles, or WIMPs.

“Understanding the nature of dark matter is one of the most important scientific puzzles in particle astrophysics today,” said Cooley, an associate professor of experimental particle physics. “The experiment will have unprecedented sensitivity to dark matter particles that are hypothesized to have very low mass and interact very rarely. So they are extremely challenging to detect. This challenge has required us to develop cutting edge detectors.”

Cooley is one of 111 scientists from 26 institutions in the SuperCDMS collaboration. SMU graduate students on the experiment include Matt Stein (Ph.D. ’18) and Dan Jardin; and also previously Hang Qiu (Ph.D. ’17).

Physicists are searching for dark matter because although it makes up the bulk of the universe it remains a mystery. They theorize that dark matter could be composed of dark matter particles, with WIMPs a top contender for the title.

If dark matter WIMP particles exist, they would barely interact with their environment and fly right through regular matter. However, every so often, they could collide with an atom of our visible world, and dark matter researchers are looking for these rare interactions.

The SuperCDMS experiment will be the world’s most sensitive for detecting the relatively light WIMPs.

Cooley and her students in the SMU Department of Physics have been working with Washington-based Pacific Northwest National Laboratory on the challenge of background control and material selection for the experiment’s WIMP detectors.

Understanding background signals in the experiment is a major challenge for the detection of the faint WIMP signals.

“One of our major concerns is background particles that can mimic the dark matter signature in our detectors,” Cooley said. “As such, the experiment is constructed from radiopure materials that are carefully characterized through a screening and assay before they are selected.”

The SMU research team also has performed simulations of background particles in the detectors.

“Doing this helps inform the design of the experiment shield,” Cooley said. “We want to select the right materials to use in construction of the experiment. For example, materials that are too high in radioactivity will produce background particles that might produce fake dark matter signals in our detectors. We are extremely careful to use materials that block background particles. We also take great care that the material we use to hold the detectors in place — copper — is very radiopure.”

The experiment will be assembled and operated within the existing Canadian laboratory SNOLAB – 6,800 feet underground inside a nickel mine near the city of Sudbury. That’s the deepest underground laboratory in North America.

The experiment’s detectors will be protected from high-energy particles, called cosmic radiation, which can create the unwanted background signals that Cooley’s team wants to prevent.

SuperCDMS SNOLAB will be 50 times more sensitive than predecessor
Scientists know that visible matter in the universe accounts for only 15 percent of all matter. The rest is the mysterious substance called dark matter.

Due to its gravitational pull on regular matter, dark matter is a key driver for the evolution of the universe, affecting the formation of galaxies like our Milky Way. It therefore is fundamental to our very own existence.

The SuperCDMS SNOLAB experiment will be at least 50 times more sensitive than its predecessor, exploring WIMP properties that can’t be probed by other experiments.

The search will be done using silicon and germanium crystals, in which the collisions would trigger tiny vibrations. However, to measure the atomic jiggles, the crystals need to be cooled to less than minus 459.6 degrees Fahrenheit — a fraction of a degree above absolute zero temperature.

The ultra-cold conditions give the experiment its name: Cryogenic Dark Matter Search, or CDMS. The prefix “Super” indicates an increased sensitivity compared to previous versions of the experiment.

Experiment will measure “fingerprints” left by dark matter
The collisions would also produce pairs of electrons and electron deficiencies that move through the crystals, triggering additional atomic vibrations that amplify the signal from the dark matter collision. The experiment will be able to measure these “fingerprints” left by dark matter with sophisticated superconducting electronics.

Besides Pacific Northwest National Laboratory, two other Department of Energy national labs are involved in the project.

SLAC National Accelerator Laboratory in California is managing the construction project. SLAC will provide the experiment’s centerpiece of initially four detector towers, each containing six crystals in the shape of oversized hockey pucks. SLAC built and tested a detector prototype. The first tower could be sent to SNOLAB by the end of 2018.

Fermi National Accelerator Laboratory is working on the experiment’s intricate shielding and cryogenics infrastructure.

“Our experiment will be the world’s most sensitive for relatively light WIMPs,” said Richard Partridge, head of the SuperCDMS group at the Kavli Institute for Particle Astrophysics and Cosmology, a joint institute of SLAC and Stanford University. “This unparalleled sensitivity will create exciting opportunities to explore new territory in dark matter research.”

Close-knit network of strong partners is crucial to success
Besides SMU, a number of U.S. and Canadian universities also play key roles in the experiment, working on tasks ranging from detector fabrication and testing to data analysis and simulation. The largest international contribution comes from Canada and includes the research infrastructure at SNOLAB.

“We’re fortunate to have a close-knit network of strong collaboration partners, which is crucial for our success,” said Project Director Blas Cabrera from KIPAC. “The same is true for the outstanding support we’re receiving from the funding agencies in the U.S. and Canada.”

Funding is from the DOE Office of Science, $19 million, the National Science Foundation, $12 million, and the Canada Foundation for Innovation, $3 million.

SuperCDMS to search for dark matter in entirely new region
“Together we’re now ready to build an experiment that will search for dark matter particles that interact with normal matter in an entirely new region,” said SuperCDMS spokesperson Dan Bauer, Fermilab.

SuperCDMS SNOLAB will be the latest in a series of increasingly sensitive dark matter experiments. The most recent version, located at the Soudan Mine in Minnesota, completed operations in 2015.

”The project has incorporated lessons learned from previous CDMS experiments to significantly improve the experimental infrastructure and detector designs for the experiment,” said SLAC’s Ken Fouts, project manager for SuperCDMS SNOLAB. “The combination of design improvements, the deep location and the infrastructure support provided by SNOLAB will allow the experiment to reach its full potential in the search for low-mass dark matter.” — SLAC National Laboratory; and Margaret Allen, SMU

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WFAA Verify: Is West Texas sinking?

A new research report, from Southern Methodist University and funded by NASA, found a “…large swath of West Texas oil patch is heaving and sinking at alarming rates.”

WFAA-TV Channel 8’s Verify journalist David Schechter covered the phenomenon of the ground sinking at alarming rates in West Texas, according to the research of SMU geophysicists Zhong Lu, professor, Shuler-Foscue Chair, and Jin-Woo Kim research scientist, both in the Roy M. Huffington Department of Earth Sciences.

The Dedman College researchers are co-authors of a new analysis using satellite radar images that discovered decades of oil production activity in West Texas have destabilized localities in an area of about 4,000 square miles populated by small towns, roadways and a vast network of oil and gas pipelines and storage tanks.

Schechter’s WFAA ABC report, “Verify: Is West Texas sinking?” aired April 18, 2018.

Lu and Kim reported their findings in the Nature publication Scientific Reports, in the article “Association between localized geohazards in West Texas and human activities, recognized by Sentinel-1A/B satellite radar imagery.”

The researchers analyzed satellite radar images that were made public by the European Space Agency, and supplemented that with oil activity data from the Railroad Commission of Texas.

The study is among the first of its kind to identify small-scale deformation signals over a vast region by drawing from big data sets spanning a number of years and then adding supplementary information.

The research is supported by the NASA Earth Surface and Interior Program, and the Shuler-Foscue Endowment at SMU.

An earlier study by the researchers revealed significant ground movement of two giant sinkholes near Wink, Texas. The SMU geophysicists found that the movement suggests the two existing holes are expanding, and new ones are forming as nearby subsidence occurs at an alarming rate.

Watch the WFAA Verify news segment.

EXCERPT:

By David Schechter
WFAA-TV Verify

A new research report, from Southern Methodist University and funded by NASA, found a “…large swath of West Texas oil patch is heaving and sinking at alarming rates.”

To find out if West Texas is sinking, first I’m going to the guy who wrote the report, Dr. Zhong Lu. He’s a geophysicist who studies the earth using satellites.

By shooting a radar beam from space — like a measuring stick — a satellite can calculate elevation changes down to the centimeter. Lu did that over a 4000 square mile area.

“This area is sinking at half meter per year,” Dr. Lu says.

That’s more than a foot-and-a-half. Lu says, that’s alarming because that much change to the earth’s surface might normally take millions of years.

One of the images in his reports shows an area of sinking earth, near Wink, TX from 2011. Five years later, the satellite shows the sunken area had spread almost 240%.

“In this area that you are studying, is oil and gas the cause of the sinking?” I ask.

“Related to the oil and gas activities,” he says.

“Oil and gas activity is causing the sinking in West Texas?” I clarify.

“Yes,” he says.

Watch the WFAA Verify news segment.

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SMU students share their research at SMU Research Day 2018

SMU Research Day 2018 featured posters and abstracts from 160 student entrants who have participated this academic year in faculty-led research, pursued student-led projects, or collaborated on team projects with graduate students and faculty scientists.

SMU strongly encourages undergraduate students to pursue research projects as an important component of their academic careers, while mentored or working alongside SMU graduate students and faculty.

Students attack challenging real-world problems, from understanding the world’s newest particle, the Higgs Boson, or preparing mosasaur fossil bones discovered in Angola, to hunting for new chemical compounds that can fight cancer using SMU’s high performance ManeFrame supercomputer.

A highlight for student researchers is SMU Research Day, organized and sponsored by the Office of Research and Graduate Studies and which was held this year on March 28-29 in the Hughes-Trigg Student Center.

The event gives students the opportunity to foster communication between students in different disciplines, present their work in a professional setting, and share the outstanding research conducted at SMU.

Find out the winners of the poster session from the SMU Office of Graduate Studies.

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Fox4WARD: Knowing how our partner is feeling

Fox 4 journalist Dan Godwin interviewed family psychologist Chrystyna D. Kouros, an associate professor in the SMU Department of Psychology, about her latest research on couples.

Lead author on the new study, Kouros and her co-author, relationship psychologist Lauren M. Papp at the University of Wisconsin-Madison, found that couples do poorly when it comes to knowing their partner is sad, lonely or feeling down.

Kouros and Papp reported their findings in the peer-reviewed journal Family Process, in the article “Couples’ Perceptions of Each Other’s Daily Affect: Empathic Accuracy, Assumed Similarity, and Indirect Accuracy.”

Godwin’s segment, “Knowing how our partner is feeling,” aired March 11 on Fox 4’s 10 p.m. Sunday news segment Fox4WARD.

Watch the full segment on Fox 4.

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Female students exposed briefly to charismatic career women are inspired to pursue male-dominated field

Easy, inexpensive experiment briefly sent inspiring female role models into intro to econ classes and sharply increased college female interest in the male-dominated, well-paying field of economics.

A low-budget field experiment to tackle the lack of women in the male-dominated field of economics has been surprisingly effective, says the study’s author, an economist at Southern Methodist University, Dallas.

Top female college students were inspired to pursue a major in economics when exposed very briefly to charismatic, successful women in the field, according to SMU economist Danila Serra.

The results suggest that exposing young women to an inspiring female role model succeeds due to the mix of both information and pure inspiration, Serra said.

“The specific women who came and talked to the students were key to the success of the intervention,” she said. “It was a factor of how charismatic and enthusiastic they were about their careers and of how interesting their jobs looked to young women.”

Given the simplicity and low-cost of the intervention, similar experiments could be easily conducted in other male-dominated or female-dominated fields of study to enhance gender diversity.

Serra’s results showed that among female students exposed to the enthusiastic mentors there was a 12-percentage point increase in the percentage of female students enrolling in the upper-level Intermediate Microeconomics course the following year — a 100% increase, or doubling, for that demographic.

Not surprisingly, given that the intervention was targeted to female students, Serra found that the role model visits had no impact on male students.

But astonishingly it had the greatest impact on high-achieving female students.

“If we restrict the analysis to the top female students, the students with a GPA of 3.7 or higher, the impact is remarkable — it is a 26 percentage points increase,” Serra said. “So this intervention was especially impactful on the top female students who perhaps were not thinking about majoring in economics.”

The results were very surprising to Serra, an assistant professor in the SMU Department of Economics in Dedman College who teaches the upper-level class Behavioral and Experimental Economics. Serra’s research relies on laboratory and field experiments, a relatively new methodology in the field of economics. She launched and is co-leader of the Laboratory for Research in Experimental Economics at SMU.

“I didn’t think such limited exposure would have such a large impact,” Serra said. “So this is telling me that one of the reasons we see so few women in certain fields is that these fields have been male-dominated for so long. This implies that it is very difficult for a young woman to come into contact with a woman in the field who has an interesting job in the eyes of young women and is enthusiastic about her major and her work. Young men, on the other hand, have these interactions all the time because there are so many male economics majors out there.”

Co-author on the research is Catherine Porter, associate professor of economics at Heriot-Watt University, Edinburgh, Scotland, and Serra’s former Ph.D. classmate at the University of Oxford.

“The gender imbalance in economics has been in the news a lot lately, and much of the discussion has been very negative,” said Porter. “This study offers something positive: a cheap way of improving the gender balance. The results can hopefully be used by other schools in order to redress the low numbers of women that major in economics – women have a lot to offer and should consider economics as a subject that is interesting and varied for a career.”

Serra reported the findings, “Gender differences in the choice of major: The importance of female role models,” on Jan. 6 in Philadelphia at the 2018 annual meeting of the Allied Social Sciences Association. Hers is one of many findings on gender and gender differences in economics presented at a session organized by the Committee for the Status of Women in the Economics Profession.

Inspiring the individual is the best tool to recruit and retain
Serra launched the study after SMU was one of 20 U.S. universities randomly chosen by Harvard economics professor Claudia Goldin for the Undergraduate Women in Economics Challenge. The project awarded each university a $12,500 grant to develop a program freely chosen by the universities to test the effectiveness of a deliberate intervention strategy to recruit and retain female majors.

Nationally, there’s only about one woman for every three men majoring in economics. SMU has a large number of economics majors for a school of its size, with 160 a year. The gender imbalance, however, is greater at SMU than the national average, with only one woman to every four men.

Serra developed her intervention based on her own experience as a Ph.D. student at the University of Oxford several years ago.

“I started thinking about role models from my personal experience,” Serra said. “As a student, I had met many female professors in the past, but my own experience taught me that inspiration is not about meeting any female professor — it’s about meeting that one person that has a huge charisma and who is highly inspiring and speaks to you specifically.”

Serra said that’s what she experienced as a graduate researcher when she first met Professor Abigail Barr, who later became her Ph.D. advisor.

“I know for a fact that that is why I decided to do a Ph.D. in economics, because I was greatly inspired by this person, her experiences and her research,” she said. “So I thought it would be interesting to see whether the same could work for a general student population.”

Two inspiring women role models, 15 minutes, four classrooms
Serra asked two of her department’s top undergraduate female economics students to take the lead in choosing the role models.

The students, Tracy Nelson and Emily Towler, sorted through rosters of SMU economics alums and shortlisted 18 men and women that they thought were working in interesting fields – which purposely excluded stereotypical jobs in banking and finance – and then carried out scripted interviews with a subset of who agreed to be interviewed via Skype to get additional information about their career path and to assess their charisma.

The students ultimately found two alumnae, Julie Lutz and Courtney Thompson, to be the most inspiring. Lutz, a 2008 graduate, started her career in management consulting but, shortly after, decided to completely change her career path by going to work for an international NGO in Nicaragua, and then as a director of operations at a toy company based in Honduras. Lutz now works in Operations at a fast-growing candy retail company. Courtney Thompson, class of 1991, has had a stellar career in marketing, becoming the senior director of North American Marketing and Information Technology at a large international communications company, with the unique claim of being not only a female econ major at a time when that was exceedingly rare, but also African American in a white dominated field.

Serra invited each woman to speak during the Spring 2016 semester for 10 to 15 minutes to four Principals of Economics classes that she had randomly selected from a set of 10. The Principles classes are very popular, with about 700 students total from a variety of desired majors, and are typically gender balanced. The imbalance, said Serra, starts the following year with Intermediate Microeconomics, which is a requirement for upper-level economics courses and so is a good indicator of a desire to major in economics.

Serra offered each role model an honorarium for speaking, but each woman declined and indicated they were happy to be back on campus sharing with students. Serra told the speakers nothing of the purpose of the research project, but encouraged each one to explain to the class why they majored in economics and to be very engaging. She directed them to approach the students with the following question in mind: “If you had to convince a student to major in economics, what would you say?”

Thompson, Serra said, during her college days played SMU’s costumed Peruna mascot, and today retains a “bubbly, big personality, that makes her extremely engaging.” In her classroom visits, Thompson described her experience working and being extremely successful in marketing with an economics degree, while being surrounded by business majors. Lutz, being still in her 20s, was very easy for the young women in the classrooms to identify with, and her experience working in the non-profit and in developing countries may have been especially appealing to them.

Young women judge best who will inspire them
Serra believes that a key to the success of the intervention was the fact her two female economics students actively participated in the selection of the role models.

“The most important thing about the project was that I realized I needed current female students to choose the role models,” Serra said. “I’m not that young anymore, so I’m probably not the best person to recognize what is inspiring to young women. I think young female students are in the best position to tell us what is most inspiring to them.”

In November the directors and officers of the International Foundation for Research in Experimental Economics honored Serra as the inaugural recipient of the $50,000 Vernon L. Smith Ascending Scholar Prize. The Smith Prize is described by the foundation as a “budding genius” award.

For her highly cited corruption research, Serra uses lab experiments to study bribery, governance and accountability, questioning long-standing assumptions. Some of her findings are that corruption declines as perpetrators take into account social costs of their illegal activities, and as victims share information about specific bribery exchanges through online reporting. Serra’s current research agenda also includes experimental work on gender differences in preferences, behaviors and outcomes. — Margaret Allen, SMU

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Daily Planet: Star Wars come to life in SMU chemist’s invention

Long ago, sort of, scenes from Star Wars triggered a child’s imagination, so that today it’s informed one of his research goals as a chemist.

Discover Canada’s science magazine show Daily Planet reported on the research of SMU organic chemist Alex Lippert, an assistant professor in the Department of Chemistry in SMU’s Dedman College of Humanities and Sciences.

Lippert’s team develops synthetic organic compounds that glow in reaction to certain conditions. He led his lab in developing a new technology that uses photoswitch molecules to craft 3-D light structures — not holograms — that are viewable from 360 degrees. An economical method for shaping light into an infinite number of volumetric objects, the technology will be useful in a variety of fields, from biomedical imaging, education and engineering, to TV, movies, video games and more.

For biomedical imaging, Lippert says the nearest-term application of the technique might be in high-volume pre-clinical animal imaging, but eventually the technique could be applied to provide low-cost internal imaging in the developing world, or less costly imaging in the developed world.

The Daily Planet segment aired Dec. 12, 2017.

Lippert’s lab includes four doctoral students and five undergraduates who assist in his research. He recently received a prestigious National Science Foundation Career Award, expected to total $611,000 over five years, to fund his research into alternative internal imaging techniques.

NSF Career Awards are given to tenure-track faculty members who exemplify the role of teacher-scholars through outstanding research, excellent education and the integration of education and research in American colleges and universities.

Lippert joined SMU in 2012. He was previously a postdoctoral researcher at the University of California, Berkeley, and earned his Ph.D. at the University of Pennsylvania, and Bachelor of Science at the California Institute of Technology.

Watch the full Dec. 12 show.

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Student-led protests seeking inclusive campuses are more likely to occur at selective universities

A new study found that racial or gender diversity alone doesn’t make a college campus feel inclusive. Students are more likely to initiate social justice campaigns at large, selective, public universities.

Some universities are more likely than others to experience student activism like the “I, Too, Am Harvard” campaign in 2014, a new study finds.

That student-led campaign at Harvard publicized the hurtful experiences routinely faced on campus by students from marginalized populations, meaning gender and ethnic minorities.

A new study led by a researcher from Southern Methodist University, Dallas, found that students are more likely to initiate social justice campaigns like the one at Harvard at large, selective, public universities where there are fewer students receiving financial aid.

The study is one of the first to take an empirical look at the institutional characteristics of universities in an effort to understand the current spike in student-led activism.

“Interestingly, our quantitative analysis found that numerical student diversity — in terms of gender and race — was not sufficient to make students feel they attend school on an inclusive campus,” said Dominique Baker, lead author on the research and assistant professor of higher education at SMU’s Simmons School of Education and Human Development.

“Our study found that more selective institutions, larger institutions, and institutions with fewer students receiving the Federal Pell Grant had greater odds of students adopting social justice campaigns to heighten awareness of their plight,” Baker said.

The federal government awards Pell grants to undergraduate students who need financial assistance for college.

Eradicating student protests isn’t the goal of the new research study, Baker said. Universities are seeing one of the largest jumps in student activism since the 1960s, so the goal is to provide data-based empirical research to help universities improve the campus environment for minority students.

“We are more concerned with what leads to protest and collective action — and which environments are conducive to it,” Baker said. “This research project helps us understand the kinds of contexts in which students may feel compelled and able to act. That may help us think about the ways in which we can best support our students and create more inclusive spaces.”

Co-author of the study is Richard Blissett, an assistant professor in Seton Hall University’s department of education. The researchers reported their findings in The Journal of Higher Education in the article “Beyond the Incident: Institutional Predictors of Student Collective Action.

Students across the country are fighting for inclusion and justice
The issue is a growing one. Recently, more than 70 U.S. universities have faced questions about how to address student protest demands regarding a variety of social injustices, such as police brutality, racism, and gender disparity, among others, the authors say.

At least 40 U.S. universities have had some sort of “I, Too, Am” campaign.

Studies from decades past that looked at student activism found that social movements and student protests during the 1960s and 1970s took place at more cosmopolitan and prestigious universities on both coasts, as well as some major public universities in between and some progressive liberal arts colleges.

With their new study, Baker and Blissett wanted to see if that holds true now. They looked at whether certain types of U.S. institutions were more likely to see student activism than others.

Numerical diversity is not enough for students to feel a campus is inclusive
The “I, Too, Am Harvard” movement began as a student play and evolved into a photo campaign. For the play and photos, 63 Harvard students held up dry-erase boards on which they wrote examples of racist things that had been said to them, as well as things they would like to say to their peers in response. The photos were published on Tumblr, then went viral on the social news website BuzzFeed. Ultimately that sparked many similarly named movements on other U.S. campuses.

For their study, Baker and Blissett analyzed 1,845 institutions, including those with publicized “I, Too, Am” campaigns. They linked the information with five-years of institution-level data from the U.S. Department of Education on all four-year public and not-for-profit universities.

The researchers also collected various measures of student diversity at each university, including gender and undergraduate racial identity, as well as Pell Grant recipients to capture low-income backgrounds.

They investigated whether the current state of diversity, or recent changes to it, could predict where an “I, Too, Am” campaign would appear. They found no consistent evidence that racial diversity was predictive of a campaign, suggesting diversity alone may not be enough to address student dissatisfaction, the authors said.

“Colleges focusing solely on the number of marginalized students may miss other characteristics of the institutions that could be associated with student mobilization or discontent,” Baker said.

Institutions without campaigns may also have inclusion issues
The researchers found that the 40 institutions with social movements were generally more selective in their admission policies, more socially prestigious, and primarily in the Mideast.

This prompted the researchers to pose the question, “What social resources are required for people to be able to protest in the first place?” Baker said. “This could explain why some institutions have campaigns and some do not. We are continuing in our work to investigate some of these types of questions.”

The results have important implications, said co-author Blissett, suggesting that student expressions of dissatisfaction with institutional racism may not be, as some theories describe, “idiosyncratic overflows of emotion,” but instead a function of the institutional environment.

“We are adding to a growing base of literature that suggests that thinking beyond diversity as reflected in enrollment numbers may be important for institutions that want to ensure that their minority students can thrive, and feel safe and at home on campus,” he said.

That said, just because an institution hasn’t had a student-led campaign does not necessarily mean that the institution doesn’t have social justice problems related to gender and race.

The research findings can help campus leadership see student protests as a key source of political information. The findings suggest that the higher education community can seek ways to create supportive spaces that make campuses feel more inclusive so students are less likely to feel compelled to protest the environment, Baker said.

“We’re not saying that the presence of racial and ethnic minorities or women is not important,” she said. “Our main conclusion from this research is that a focus on forms of diversity and inclusion beyond only enrollment numbers may also be important. Institutions may want to think more holistically about the challenges that these students are facing on their campuses.” — Margaret Allen

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GAINcast Episode 89: How Speed Happens (with Peter Weyand)

“People recognize the power of science, in terms of testing and numbers. But unless you’re involved in it it’s hard to appreciate the creativity that is also part of the process.” — Peter Weyand

The founder of modern sports performance training, Vern Gambetta, interviewed SMU locomotion researcher Peter Weyand about human speed and performance for his GAINcast show.

The GAINcast name is an acronym for the internationally recognized Gambetta’s self-made sports performance education, outreach and training efforts, Gambetta Athletic Improvement Network.

Gambetta’s 60-minute interview with Weyand posted Nov. 2, 2017, “Gaincast Episode 89: How Speed Happens (with Peter Weyand).”

In it, Weyand touches on the experiences early in his career as a high school and college athlete playing basketball and running track that sparked his pursuit of a research and academic career in sports science and human performance.

As a high school coach, Weyand’s early interest intensified, leading him to pursue advanced degrees and a scientific career exploring the mechanics of human locomotion and speed, including at the University of Georgia and then at Harvard’s Concord Field Station.

During that time, Weyand worked with early pioneers in the biomechanics and human performance field, including renowned researcher Dick Taylor. At the field station in particular, Weyand credits Taylor with mentoring young researchers in aggressively and fearlessly digging into basic science questions surrounding mammalian locomotion.

“It was wide open, anything goes. It wasn’t these reductionist questions …. It was anything under the sun you could cook up. And there was an insistence on good scientific questions, and a real integrative perspective on all of it. Those were my formative scientific experiences. People recognize the power of science, in terms of testing and numbers. But unless you’re involved in it it’s hard to appreciate the creativity that is also part of the process. There’s an art of doing science and Dick was a master of that. And everybody that came through that field station under his training, which is really a who’s who in our field in many respects, learned that art from him.”

Weyand is an expert on human locomotion and the mechanics of running. Research from his SMU Locomotor Performance Laboratory in SMU’s Annette Caldwell Simmons School of Education and Human Development has produced ground-breaking scientific findings about the science of human speed.

The lab focuses on the mechanical basis of human performance and includes physicist and engineer Laurence Ryan, an expert in force and motion analysis.

The Weyand lab’s most recent research found that the world’s fastest sprinter, Usain Bolt, has an asymmetrical running gait, contrary to the common notions about coaching and training for speed. Bolt’s asymmetry was discovered using the lab’s two-mass model tool, which the researchers have described in the Journal of Experimental Biology, “A general relationship links gait mechanics and running ground reaction forces.” The model can assess the crucial early portion of foot-ground contact — the impact-phase force and time relationships — from motion data only.

Weyand is Glenn Simmons Professor of Applied Physiology and professor of biomechanics in the Department of Applied Physiology & Wellness.

Listen to the podcast.

EXCERPT:

By Martin Bingisser
GAINcast

There are some basic questions out there that are difficult to answer, such as what limits human running speed. As technology advances, scientists can better study and start to answer this and other simple questions like what makes one athlete faster than another.

Dr. Peter Weyand has spent decades researching locomotion on both animals and humans. His work with elite sprinters has brought some interesting conclusions and is driving the field forward. On this episode of the GAINcast he joins us to discuss his research and its practical implications.

Listen to the podcast.

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The CW33: Dark Matter Day rocks SMU’s campus

The CW33 TV visited SMU on Halloween to get a glimpse of International Dark Matter Day in action on the SMU campus.

The CW33 TV stopped at the SMU campus during the early morning hours of Halloween to interview SMU physics professor Jodi Cooley about the capers afoot in celebration of International Dark Matter Day.

The SMU Department of Physics in Dedman College of Humanities and Sciences hosted the Oct. 31, 2017 Dark Matter Day celebration for students, faculty, staff and Dallas-area residents.

As part of the festivities, there were speaking events by scientists in the field of dark matter, including dark matter expert Cooley, to explain the elusive particles that scientists refer to as dark matter.

Then throughout Halloween day, the public was invited to test their skills at finding dark matter — in this case, a series of 26 rocks bearing educational messages related to dark matter, which the Society of Physics Students had painted and hidden around the campus. Lucky finders traded them for prizes from the Physics Department.

“In the spirit of science being a pursuit open to all, we are excited to welcome all members of the SMU family to become dark matter hunters for a day,” said Cooley, whose research is focused on the scientific challenge of detecting dark matter. “Explore your campus in the search for dark matter rocks, just as physicists are exploring the cosmos in the hunt for the nature of dark matter itself.”

Watch the full news segment.

EXCERPT:

By Shardae Neal
The CW33

On Halloween (excuse us) “International Dark Matter Day,” SMU students hosted a public witch hunt to search for the unknown: dark matter.

“What we’re doing is hiding 26 rocks that we have with the help of our society of physic students,” explained SMU Physicist Jodi Cooley.

What exactly is dark matter?

“Think about all the stuff there is in the universe,” Cooley added. “What we can account for makes up only four to five percent of the universe. The rest of it is unknown. Turns out 26% of that unknown stuff is dark matter.”

Watch the full news segment.

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SMU Dark Matter Day celebration culminates in a dark matter rock hunt on Halloween

“In the spirit of science being a pursuit open to all, we are excited to welcome all members of the SMU family to become dark matter hunters for a day.” — SMU physicist Jodi Cooley

This Halloween, people around the world will be celebrating the mysterious cosmic substance that permeates our universe: dark matter.

At SMU, the Department of Physics in Dedman College of Humanities and Sciences is hosting a Dark Matter Day celebration, and students, faculty, staff and DFW residents are invited to join in the educational fun with events open to the public.

To kick off the festivities, two speaking events by scientists in the field of dark matter will familiarize participants with the elusive particles that scientists refer to as dark matter. The first talk is oriented toward the general public, while the second is more technical and will appeal to people familiar with one of the STEM areas of science, technology, engineering or mathematics, particularly physics and astrophysics.

Then throughout Halloween day, everyone is invited to test their skills at finding dark matter — in this case, a series of rocks bearing educational messages related to dark matter, which the Society of Physics Students has painted and then hidden around the campus.

Anyone lucky enough to find one of the 26 rocks can present it at the Physics Department office to receive a prize, says SMU physics professor Jodi Cooley, whose research is focused on the scientific challenge of detecting dark matter.

“In the spirit of science being a pursuit open to all, we are excited to welcome all members of the SMU family to become dark matter hunters for a day,” Cooley said. “Explore your campus in the search for dark matter rocks, just as physicists are exploring the cosmos in the hunt for the nature of dark matter itself.”

Anyone who discovers a dark matter rock on the SMU campus is encouraged to grab their phone and snap a selfie with their rock. Tweet and tag your selfie #SMUDarkMatter so that @SMU, @SMUResearch and @SMUPhysics can retweet photos of the lucky finders.

As SMU’s resident dark matter scientist, Cooley is part of the 100-person international SuperCDMS SNOLAB experiment, which uses ultra pure materials and highly sensitive custom-built detectors to listen for the passage of dark matter.

SuperCDMS, an acronym for Super Cryogenic Dark Matter Search, resides at SNOLAB, an existing underground science laboratory in Ontario, Canada. Located deep underground, SNOLAB allows scientists to use the earth as a shield to block out particles that resemble dark matter, making it easier to see the real thing.

The SuperCDMS SNOLAB experiment, expected to be operational in 2020, has been designed to go deeper below the surface of the earth than earlier generations of the research.

“Dark matter experiments have been a smashing success — they’ve progressed farther than anyone anticipated. The SuperCDMS SNOLAB experiment is quite unique,” Cooley said. “It will allow us to probe models that predict dark matter with the tiniest masses.”

For more on Cooley’s research, go to “Hunt for dark matter takes physicists deep below earth’s surface, where WIMPS can’t hide. — Margaret Allen, SMU

Dark Matter Day events at SMU:

  • Sunday, Oct. 29, 4 p.m., McCord Auditorium — Maruša Bradač, Associate Professor at the University of California at Davis, will give a public lecture on dark matter. A reception will follow the lecture from 5 p.m. to 6 p.m. in the Dallas Hall Rotunda with beverages and light snacks. This event is free and open to the public, and is designed to be open to the widest possible audience.
  • Monday, Oct. 30, 4 p.m., Fondren Science Building, Room 158 — SMU Associate Professor Jodi Cooley will present a seminar on the SuperCDMS direct-detection dark matter search experiment. This event is part of the Physics Department Speaker Series. While this event is open to the public, it will be a more technical talk and may appeal more to an audience interested in the STEM areas of science, technology, engineering and mathematics, especially physics and astrophysics.
  • Tuesday, Oct. 31, 9 a.m. – 4 p.m., SMU Main Campus, Dark Matter Rock Hunt — The SMU Department of Physics has hidden “dark matter rocks” all across the SMU main campus. If you discover one of the dark matter rocks, bring it to the main office of the Physics Department, Fondren Science Building, Room 102, and get a special prize. All SMU students, faculty, staff and community members are welcome to join in the search.
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A Total Eclipse of the First Day of School

Dedman College, SMU Physics Department host Great American Solar Eclipse 2017 viewing

Thousands of students, faculty and townspeople showed up to campus Monday, Aug. 21 to observe the Great American Solar Eclipse at a viewing hosted by Dedman College of Humanities and Sciences and the SMU Department of Physics.

The festive event coincided with the kick-off of SMU’s Fall Semester and included Solar Eclipse Cookies served while viewing the rare astronomical phenomenon.

The eclipse reached its peak at 1:09 p.m. in Dallas at more than 75% of totality.

“What a great first day of the semester and terrific event to bring everyone together with the help of Dedman College scientists,” said Dedman Dean Thomas DiPiero. “And the eclipse cookies weren’t bad, either.”

Physics faculty provided indirect methods for observing the eclipse, including a telescope with a viewing cone on the steps of historic Dallas Hall, a projection of the eclipse onto a screen into Dallas Hall, and a variety of homemade hand-held devices.

Outside on the steps of Dallas Hall, Associate Professor Stephen Sekula manned his home-built viewing tunnel attached to a telescope for people to indirectly view the eclipse.

“I was overwhelmed by the incredible response of the students, faculty and community,” Sekula said. “The people who flocked to Dallas Hall were energized and engaged. It moved me that they were so interested in — and, in some cases, had their perspective on the universe altered by — a partial eclipse of the sun by the moon.”

A team of Physics Department faculty assembled components to use a mirror to project the eclipse from a telescope on the steps of Dallas Hall into the rotunda onto a screen hanging from the second-floor balcony.

Adjunct Professor John Cotton built the mount for the mirror — with a spare, just in case — and Professor and Department Chairman Ryszard Stroynowski and Sekula arranged the tripod setup and tested the equipment.

Stroynowski also projected an illustration of the Earth, the moon and the sun onto the wall of the rotunda to help people visualize movement and location of those cosmic bodies during the solar eclipse.

Professor Fred Olness handed out cardboard projectors and showed people how to use them to indirectly view the eclipse.

“The turn-out was fantastic,” Olness said. “Many families with children participated, and we distributed cardboard with pinholes so they could project the eclipse onto the sidewalk. It was rewarding that they were enthused by the science.”

Stroynowski, Sekula and others at the viewing event were interviewed by CBS 11 TV journalist Robert Flagg.

Physics Professor Thomas Coan and Guillermo Vasquez, SMU Linux and research computing support specialist, put together a sequence of photos they took during the day from Fondren Science Building.

“The experience of bringing faculty, students and even some out-of-campus community members together by sharing goggles, cameras, and now pictures of one of the great natural events, was extremely gratifying,” Vasquez said.

Sekula said the enthusiastic response from the public is driving plans to prepare for the next event of this kind.

“I’m really excited to share with SMU and Dallas in a total eclipse of the sun on April 8, 2024,” he said.

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Construction begins on international mega-science neutrino experiment

Groundbreaking held today in South Dakota marks the start of excavation for the Long-Baseline Neutrino Facility, future home to the international Deep Underground Neutrino Experiment.

SMU is one of more than 100 institutions from around the world building hardware for a massive international experiment — a particle detector — that could change our understanding of the universe.

Construction will take years and scientists expect to begin taking data in the middle of the next decade, said SMU physicist Thomas E. Coan, a professor in the SMU Department of Physics and a researcher on the experiment.

The turning of a shovelful of earth a mile underground marks a new era in particle physics research. The groundbreaking ceremony was held Friday, July 21, 2017 at the Sanford Underground Research Facility in Lead, South Dakota.

Dignitaries, scientists and engineers from around the world marked the start of construction of the experiment that could change our understanding of the universe.

The Long-Baseline Neutrino Facility (LBNF) will house the international Deep Underground Neutrino Experiment. Called DUNE for short, it will be built and operated by a group of roughly 1,000 scientists and engineers from 30 countries, including Coan.

When complete, LBNF/DUNE will be the largest experiment ever built in the United States to study the properties of mysterious particles called neutrinos. Unlocking the mysteries of these particles could help explain more about how the universe works and why matter exists at all.

“DUNE is designed to investigate a broad swath of the properties of neutrinos, one of the universe’s most abundant but still mysterious electrically neutral particles,” Coan said.

The experiment seeks to understand strange phenomena like neutrinos changing identities — called “oscillation” — in mid-flight and the behavioral differences between a neutrino an its anti-neutrino sibling, Coan said.

“A crisp understanding of neutrinos holds promise for understanding why any matter survived annihilation with antimatter from the Big Bang to form the people, planets and stars we see today,” Coan said. “DUNE is also able to probe whether or not the humble proton, found in all atoms of the universe, is actually unstable and ultimately destined to eventually decay away. It even has sensitivity to undertanding how stars explode into supernovae by studying the neutrinos that stream out from them during the explosion.”

Coan also is a principal investigator on NOvA, another neutrino experiment collaboration of the U.S. Department of Energy’s Fermi National Laboratory. NOvA, in northern Minnesota, is another massive particle detector designed to observe and measure the behavior of neutrinos.

Similar to NOvA, DUNE will be a neutrino beam from Fermilab that runs to Homestake Gold Mine in South Dakota. DUNE’s beam will be more powerful and will take the measurements NOvA is taking to an unprecedented precision, scientists on both experiments have said. Any questions NOvA fails to answer will most certainly be answered by DUNE.

At its peak, construction of LBNF is expected to create almost 2,000 jobs throughout South Dakota and a similar number of jobs in Illinois.

Institutions in dozens of countries will contribute to the construction of DUNE components. The DUNE experiment will attract students and young scientists from around the world, helping to foster the next generation of leaders in the field and to maintain the highly skilled scientific workforce in the United States and worldwide.

Beam of neutrinos will travel 800 miles (1,300 kilometers) through the Earth
The U.S. Department of Energy’s Fermi National Accelerator Laboratory, located outside Chicago, will generate a beam of neutrinos and send them 800 miles (1,300 kilometers) through the Earth to Sanford Lab, where a four-story-high, 70,000-ton detector will be built beneath the surface to catch those neutrinos.

Scientists will study the interactions of neutrinos in the detector, looking to better understand the changes these particles undergo as they travel across the country in less than the blink of an eye.

Ever since their discovery 61 years ago, neutrinos have proven to be one of the most surprising subatomic particles, and the fact that they oscillate between three different states is one of their biggest surprises. That discovery began with a solar neutrino experiment led by physicist Ray Davis in the 1960s, performed in the same underground mine that now will house LBNF/DUNE. Davis shared the Nobel Prize in physics in 2002 for his experiment.

DUNE scientists will also look for the differences in behavior between neutrinos and their antimatter counterparts, antineutrinos, which could give us clues as to why the visible universe is dominated by matter.

DUNE will also watch for neutrinos produced when a star explodes, which could reveal the formation of neutron stars and black holes, and will investigate whether protons live forever or eventually decay, bringing us closer to fulfilling Einstein’s dream of a grand unified theory.

Construction over the next 10 years is funded by DOE with 30 countries
But first, the facility must be built, and that will happen over the next 10 years. Now that the first shovel of earth has been moved, crews will begin to excavate more than 870,000 tons of rock to create the huge underground caverns for the DUNE detector.

Large DUNE prototype detectors are under construction at European research center CERN, a major partner in the project, and the technology refined for those smaller versions will be tested and scaled up when the massive DUNE detectors are built.

This research is funded by the U.S. Department of Energy Office of Science in conjunction with CERN and international partners from 30 countries.

DUNE collaborators come from institutions in Armenia, Brazil, Bulgaria, Canada, Chile, China, Colombia, Czech Republic, Finland, France, Greece, India, Iran, Italy, Japan, Madagascar, Mexico, the Netherlands, Peru, Poland, Romania, Russia, South Korea, Spain, Sweden, Switzerland, Turkey, Ukraine, United Kingdom and the United States. — Fermilab, SMU

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The New York Times: Something Strange in Usain Bolt’s Stride

Bolt is the fastest sprinter ever in spite of — or because of? — an uneven stride that upends conventional wisdom.

The New York Times reporter Jeré Longman covered the research of SMU biomechanics expert Peter Weyand and his colleagues Andrew Udofa and Laurence Ryan for a story about Usain Bolt’s apparent asymmetrical running stride.

The article, “Something Strange in Usain Bolt’s Stride,” published July 20, 2017.

The researchers in the SMU Locomotor Performance Laboratory reported in June that world champion sprinter Usain Bolt may have an asymmetrical running gait. While not noticeable to the naked eye, Bolt’s potential asymmetry emerged after the researchers dissected race video to assess his pattern of ground-force application — literally how hard and fast each foot hits the ground. To do so they measured the “impulse” for each foot.

Biomechanics researcher Udofa presented the findings at the 35th International Conference on Biomechanics in Sport in Cologne, Germany. His presentation, “Ground Reaction Forces During Competitive Track Events: A Motion Based Assessment Method,” was delivered June 18.

The analysis thus far suggests that Bolt’s mechanics may vary between his left leg to his right. The existence of an unexpected and potentially significant asymmetry in the fastest human runner ever would help scientists better understand the basis of maximal running speeds. Running experts generally assume asymmetry impairs performance and slows runners down.

Udofa has said the observations raise the immediate scientific question of whether a lack of symmetry represents a personal mechanical optimization that makes Bolt the fastest sprinter ever or exists for reasons yet to be identified.

Weyand, who is Glenn Simmons Professor of Applied Physiology and professor of biomechanics in the Department of Applied Physiology & Wellness in SMU’s Annette Caldwell Simmons School of Education & Human Development, is director of the Locomotor Lab.

An expert on human locomotion and the mechanics of running, Weyand has been widely interviewed about the running controversy surrounding double-amputee South African sprinter Oscar Pistorius. Weyand co-led a team of scientists who are experts in biomechanics and physiology in conducting experiments on Pistorius and the mechanics of his racing ability.

For his most recently published research, Weyand was part of a team that developed a concise approach to understanding the mechanics of human running. The research has immediate application for running performance, injury prevention, rehab and the individualized design of running shoes, orthotics and prostheses. The work integrates classic physics and human anatomy to link the motion of individual runners to their patterns of force application on the ground — during jogging, sprinting and at all speeds in between.

They described the two-mass model earlier this year in the Journal of Experimental Biology in their article, “A general relationship links gait mechanics and running ground reaction forces.” It’s available at bitly, http://bit.ly/2jKUCSq.

The New York Times subscribers or readers with remaining limited free access can read the full story.

EXCERPT:

By Jeré Longman
The New York Times

DALLAS — Usain Bolt of Jamaica appeared on a video screen in a white singlet and black tights, sprinting in slow motion through the final half of a 100-meter race. Each stride covered nine feet, his upper body moving up and down almost imperceptibly, his feet striking the track and rising so rapidly that his heels did not touch the ground.

Bolt is the fastest sprinter in history, the world-record holder at 100 and 200 meters and the only person to win both events at three Olympics. Yet as he approaches his 31st birthday and retirement this summer, scientists are still trying to fully understand how Bolt achieved his unprecedented speed.

Last month, researchers here at Southern Methodist University, among the leading experts on the biomechanics of sprinting, said they found something unexpected during video examination of Bolt’s stride: His right leg appears to strike the track with about 13 percent more peak force than his left leg. And with each stride, his left leg remains on the ground about 14 percent longer than his right leg.

This runs counter to conventional wisdom, based on limited science, that an uneven stride tends to slow a runner down.

So the research team at S.M.U.’s Locomotor Performance Laboratory is considering a number of questions as Bolt prepares for what he said would be his final performances at a major international competition — the 100 meters and 4×100-meter relay next month at the world track and field championships in London.

Among those questions: Does evenness of stride matter for speed? Did Bolt optimize this irregularity to become the fastest human? Or, with a more balanced stride during his prime, could he have run even faster than 9.58 seconds at 100 meters and 19.19 seconds at 200 meters?

“That’s the million-dollar question,” said Peter Weyand, director of the S.M.U. lab.

The S.M.U. study of Bolt, led by Andrew Udofa, a doctoral researcher, is not yet complete. And the effect of asymmetrical strides on speed is still not well understood. But rather than being detrimental for Bolt, the consequences of an uneven stride may actually be beneficial, Weyand said.

It could be that Bolt has naturally settled into his stride to accommodate the effects of scoliosis. The condition curved his spine to the right and made his right leg half an inch shorter than his left, according to his autobiography.

Initial findings from the study were presented last month at an international conference on biomechanics in Cologne, Germany. Most elite sprinters have relatively even strides, but not all. The extent of Bolt’s variability appears to be unusual, Weyand said.

“Our working idea is that he’s probably optimized his speed, and that asymmetry reflects that,” Weyand said. “In other words, correcting his asymmetry would not speed him up and might even slow him down. If he were to run symmetrically, it could be an unnatural gait for him.”

Antti Mero, an exercise physiologist at the University of Jyvaskyla in Finland, who has researched Bolt’s fastest races, said he was intrigued by the S.M.U. findings.

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People ForWords team named semifinalist in national XPrize competition

SMU’s puzzle-solving smartphone app selected as one of eight to move to next round in $7M Barbara Bush Foundation Adult Literacy XPRIZE competition

For Corey Clark, deputy director for research in the SMU Guildhall game development program, adult literacy became a personal challenge the moment he learned of its scope. “There are about 600,000 adults in Dallas who have less than a third-grade reading level,” he says. “If we could help 10 percent of those people, that’s 60,000 people who could learn to read proficiently. That makes a difference in a lot of people’s lives.”

This challenge is at the heart of a partnership between Southern Methodist University and Literacy Instruction for Texas (LIFT), and their work has been recognized with a semifinalist position in the $7 million Barbara Bush Foundation Adult Literacy XPRIZE presented by Dollar General Literacy Foundation competition.

The team, People ForWords, includes collaborators from SMU Guildhall, SMU Simmons School of Education and Human Development, and LIFT. People ForWords is one of eight teams chosen for the semifinals out of 109 entrants, and the only Texas team to make the cut.

In this global competition, teams develop mobile applications, compatible with smart phone devices, that have the potential to increase literacy skills among adult learners. The solutions discovered through the applications will help reveal and overcome roadblocks in improving adult literacy through providing access, retention, and a scalable product to the public.

As development lead of People ForWords, Clark recruited a cadre of Guildhall-trained artists, programmers and producers via the program’s alumni career portal. The development team came together in March 2016. By October, they had created a beta version of Codex: The Lost Words of Atlantis.

As participants in a globe-trotting adventure, English-language learners play as enterprising archaeologists and work to decipher the forgotten language of a lost civilization. As the players solve the puzzles of the Atlantean runes, audible prompts for each letter and sound help them learn the look and feel of written English<, developing and strengthening their own reading skills. Developed for English- and Spanish-speaking adults, but safe for all ages, the game also provides history lessons as it visits real locations around the world. Needs of adult literacy learners very different from other gamers
Codex: The Lost Words of Atlantis supports English literacy learners in both English and Spanish. Egypt is the first destination in a planned five-region journey across the globe; in future versions, People ForWords plans to develop additional regions with new gameplay, new characters, and new literacy skills.

An important step in the game design process came with playtesting at LIFT Academy and Dallas’ Jubilee Park community center — where the designers could reach their game’s target audience. They quickly figured out that the needs of adult literacy learners were very different from those of other gamers.

“This was the first time some participants had used a desktop computer,” Clark says. “How do you make a game that’s fun and interactive, yet simple and intuitive enough to be a first experience with technology?”

To find out, Clark collected and analyzed data on game elements such as how long players stuck with a task, how many times they repeated moves, how quickly they progressed, and whether performing the game actions translated into the desired learning outcomes. “First, games have to be fun,” he says. “From story to characters, you want to engage people enough to play over and over again. And this happens to be the exact same process that reinforces learning.”

And as Clark points out, at its core, every game is about learning. “Whether it’s a map, a system or a skill, you learn something new with every move you make,” he says. “And games are safe environments to do that, because they allow you to fail in ways that aren’t overwhelming. They let you keep trying until you succeed.”

Illiteracy plays a factor in poverty
In North Texas, the XPRIZE is more than a competition. According to LIFT, one in five adults in North Texas cannot read, a key factor in poverty. Dallas has the fourth highest concentration of poverty in the nation, with a 41 percent increase from 2000 to 2014.

“This is a dedicated effort by our team to tackle the growing issue of low literacy and poverty in our communities,” according to a People ForWords statement. “Each organization involved in the collaboration brings their expertise to the competition: knowledge in education, adult literacy, and game development. Together these skills have allowed our team to build a functional, fun application that helps improve adult literacy through sharpening reading and writing skills.”

“The faculty at SMU Guildhall bridge the gap between serious academic research and commercial video games,” says Guildhall Director Gary Brubaker. “This environment has allowed our research and development team to yield a product for the XPRIZE adult literacy competition that brings together the creative, entertaining nature of games with the impactful literacy lessons being taught.”

Research plays a large role at SMU Guildhall. Not only are large-scale research endeavors such as the XPRIZE taking place year-round, but research is also incorporated into the curriculum. Independent studies such as student theses explore a vast range of interests within video game development and its global implications and uses. Both current students and alumni are able to put their analytical and research skills to good use by participating as funded research assistants on a myriad of Guildhall’s “games for good” projects.

“Our students greatly benefit from breaking ground with new gaming technologies and expanding their usage into other fields,” said Elizabeth Stringer, Deputy Director of Academics at SMU Guildhall. “Many of our graduates continue to use their game development skills to aid society and further causes for which they are passionate.”

Testing of the eight semifinalists’ literacy software begins in mid-July with 12,000 adults who read English at a third grade level or lower. Selection of up to five finalists will depend on results of post-game testing to evaluate literacy gains among test subjects. Finalists will be named in May 2018, and the winner will be selected in 2019. — Kathleen Tibbetts, SMU

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SMU and LIFT team named one of eight semifinalists for $7M Barbara Bush Foundation Adult Literacy XPrize

SMU’s “Codex: Lost Words of Atlantis” adult literacy video game is puzzle-solving smartphone game app to help adults develop literacy skills

The SMU and Literacy Instruction for Texas (LIFT) team was named today one of eight semifinalists in the $7 million Barbara Bush Foundation Adult Literacy XPRIZE presented by Dollar General Literacy Foundation.

The XPRIZE is a global competition that challenges teams to develop mobile applications designed to increase literacy skills in adult learners.

SMU participants include education experts from SMU’s Simmons School of Education and Human Development, along with video game developers from SMU Guildhall — a graduate school video game development program. They are working with literacy experts from LIFT to design an engaging, puzzle-solving smartphone app to help adults develop literacy skills. Students from LIFT help test the game.

The SMU and LIFT team, People ForWords, is one of 109 teams who entered the competition in 2016. The team developed “Codex: Lost Words of Atlantis.”

In the game, players become archeologists hunting for relics from the imagined once-great civilization of Atlantis. By deciphering the forgotten language of Atlantis, players develop and strengthen their own reading skills. The game targets English- and Spanish-speaking adults.

Students at LIFT, a North Texas nonprofit adult literacy provider, have tested and provided key insights for the game during its development. According to LIFT, one in five adults in North Texas cannot read, a key factor in poverty. Dallas has the fourth highest concentration of poverty in the nation, with a 41 percent increase from 2000 to 2014. LIFT is one of the largest and most widely respected adult basic education programs in Texas and offers adult basic literacy, GED preparation and English as a Second Language programs with the goal of workforce empowerment.

Testing of the eight semi-finalists’ literacy software begins in mid-July with 12,000 adults who read English at a third grade level or lower. Selection of up to five finalists will depend on results of post-game testing to evaluate literacy gains among test subjects. Finalists will be named in May of 2018 and the winner will be named in 2019. — Nancy George, SMU

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Does symmetry matter for speed? Study finds Usain Bolt may have asymmetrical running gait

A new method for assessing patterns of ground-force application suggests the right and left legs of the world’s fastest man may perform differently, defying current scientific assumptions about running speed.

World champion sprinter Usain Bolt may have an asymmetrical running gait, according to data recently presented by researchers from Southern Methodist University, Dallas.

While not noticeable to the naked eye, Bolt’s potential asymmetry emerged after SMU researchers assessed the running mechanics of the world’s fastest man.

The analysis thus far suggests that Bolt’s mechanics may vary between his left leg and his right, said Andrew Udofa, a biomechanics researcher in the SMU Locomotor Performance Laboratory.

The existence of an unexpected and potentially significant asymmetry in the fastest human runner ever would help scientists better understand the basis of maximal running speeds. Running experts generally assume asymmetry impairs performance and slows runners down.

“Our observations raise the immediate scientific question of whether a lack of symmetry represents a personal mechanical optimization that makes Bolt the fastest sprinter ever or exists for reasons yet to be identified,” said Udofa, a member of the research team.

The SMU Locomotor Lab, led by Peter Weyand, focuses on the mechanical basis of human performance. The group includes physicist and engineer Laurence Ryan, an expert in force and motion analysis, and doctoral researcher Udofa.

The intriguing possibility of Bolt’s asymmetry emerged after the SMU researchers decided to assess his pattern of ground-force application — literally how hard and fast each foot hits the ground. To do so they measured the “impulse” for each foot.

Impulse is a combination of the amount of force applied to the ground multiplied by the time of foot-ground contact.

“The manner in which Bolt achieves his impulses seems to vary from leg to leg,” Udofa said. “Both the timing and magnitude of force application differed between legs in the steps we have analyzed so far.”

Impulse matters because that’s what determines a runner’s time in the air between steps.

“If a runner has a smaller impulse, they don’t get as much aerial time,” Weyand said. “Our previous published research has shown greater ground forces delivered in shorter periods of foot-ground contact are necessary to achieve faster speeds. This is true in part because aerial times do not differ between fast and slow runners at their top speeds. Consequently, the combination of greater ground forces and shorter contact times is characteristic of the world’s fastest sprinters.”

The researchers didn’t test Bolt in the SMU lab. Instead, they used a new motion-based method to assess the patterns of ground-force application. They analyzed Bolt and other elite runners using existing high-speed race footage available from NBC Universal Sports. The runners were competing in the 2011 Diamond League race at the World Athletics Championships in Monaco.

Udofa analyzed 20 of Bolt’s steps from the Monaco race, averaging data from 10 left and 10 right.

The researchers relied upon foot-ground contact time, aerial time, running velocity and body mass to determine the ground reaction forces using the new method, made possible by the “two-mass model” of running mechanics.

Runners typically run on a force-instrumented treadmill or force plates for research examining running ground-reaction forces. However, the two-mass model method provides a tool that enables motion-based assessments of ground reaction forces without direct force measurements.

“There are new avenues of research the model may make possible because direct-force measurements are not required,” Weyand said. “These include investigations of the importance of symmetry for sprinting performance. The two-mass model may facilitate the acquisition of data from outside the lab to help us better address these kinds of questions.”

Udofa presented the findings at the 35th International Conference on Biomechanics in Sport in Cologne, Germany. His presentation, “Ground Reaction Forces During Competitive Track Events: A Motion Based Assessment Method,” was delivered June 18.

Two-mass model relies on basic motion data
SMU researchers developed the concise two-mass model as a simplified way to predict the entire pattern of force on the ground — from impact to toe-off — with very basic motion data.

The model integrates classic physics and human anatomy to link the motion of individual runners to their patterns of force on the ground.

It provides accurate predictions of the ground force vs. time patterns throughout each instant of the contact period, regardless of limb mechanics, foot-strike type or running speed.

The two-mass model is substantially less complex than other scientific models that explain patterns of ground force application during running. Most existing models are more elaborate in relying on 14 or more variables, many of which are less clearly linked to the human body.

“The two-mass model provides us with a new tool for assessing the crucial early portion of foot-ground contact that is so important for sprinting performance,” said Udofa. “The model advances our ability to assess the impact-phase force and time relationships from motion data only.”

The two-mass model was developed in SMU’s Locomotor Performance Laboratory by Kenneth P. Clark, now an assistant professor in the Department of Kinesiology at West Chester University, West Chester, Pa.; Ryan, a physicist and research engineer at SMU’s Locomotor Performance Laboratory; and Weyand.

The researchers described the two-mass model earlier this year in the Journal of Experimental Biology in their article, “A general relationship links gait mechanics and running ground reaction forces.” It’s available at bitly, http://bit.ly/2jKUCSq.

Support for the research came from the U.S. Army Medical Research and Materiel Command.

Weyand is Glenn Simmons Professor of Applied Physiology and professor of biomechanics in the Department of Applied Physiology & Wellness in SMU’s Annette Caldwell Simmons School of Education & Human Development. — Margaret Allen, SMU

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Study solves mystery of how plants use sunlight to tell time via cell protein signaling

Discovery may someday allow farmers to grow crops in climates where they currently won’t grow and allows scientists to make a subtle, targeted mutation to a specific native plant protein

Findings of a new study solve a key mystery about the chemistry of how plants tell time so they can flower and metabolize nutrients.

The process — a subtle chemical event — takes place in the cells of every plant every second of every day.

The new understanding means farmers may someday grow crops under conditions or in climates where they currently can’t grow, said chemist Brian D. Zoltowski, Southern Methodist University, Dallas, who led the study.

“We now understand the chemistry allowing plants to maintain a natural 24-hour rhythm in sync with their environment. This allows us to tune the chemistry, like turning a dimmer switch up or down, to alter the organism’s ability to keep time,” Zoltowski said. “So we can either make the plant’s clock run faster, or make it run slower. By altering these subtle chemical events we might be able to rationally redesign a plant’s photochemistry to allow it to adapt to a new climate.”

Specifically, the researchers figured out the chemical nuts and bolts of how a chemical bond in the protein Zeitlupe forms and breaks in reaction to sunlight, and the rate at which it does so, to understand how proteins in a plant’s cells signal the plant when to bloom, metabolize, store energy and perform other functions.

Zoltowski’s team, with collaborators at the University of Washington and Ohio State University, have made plant strains with specific changes to the way they are able to respond to blue-light.

“With these plants we demonstrate that indeed we can tune how the organisms respond to their environment in an intelligible manner,” Zoltowski said.

Zoltowski and his colleagues made the discovery by mapping the crystal structure of a plant protein whose function is to measure the intensity of sunlight. The protein is able to translate light intensity to a bond formation event that allows the plant to track the time of day and tell the plant when to bloom or metabolize nutrients.

A plant uses visual cues to constantly read every aspect of its environment and retune its physiological functions to adapt accordingly. Some of these cues are monitored by plant proteins that absorb and transmit light signals — called photoreceptors. The research team specifically studied two key photoreceptors, Zeitlupe (Zite-LOO-puh) and FKF-1.

“Plants have a very complex array of photoreceptors absorbing all different wavelengths of light to recognize every aspect of their environment and adapt accordingly,” said Zoltowski, an assistant professor in the SMU Department of Chemistry. “All their cells and tissue types are working in concert with each other.”

The finding was reported in the article “Kinetics of the LOV domain of Zeitlupe determine its circadian function in Arabidopsis” in the journal eLIFE online in advance of print publication.

Co-author and lead author is Ashutosh Pudasaini, a doctoral graduate from the SMU Department of Chemistry who is now a postdoctoral fellow at the University of Texas Southwestern Medical School, Dallas. Other co-authors are Jae Sung Shim, Young Hun Song and Takato Imaizumi, University of Washington, Seattle; Hua Shi and David E. Somers, Ohio State University; and Takatoshi Kiba, RIKEN Center for Sustainable Resource Science, Japan.

The research is funded through a grant from the National Institute of General Medical Sciences of the National Institutes of Health awarded to Zoltowski’s lab.

Nighttime is the right time for plants to grow
“If you live in the Midwest, people say you hear the corn growing at night,” said Zoltowski, who grew up in rural Wisconsin.

“During the day, a plant is storing as much energy as it can by absorbing photons of sunlight, so that during the evening it can do all its metabolism and growth and development. So there’s this separation between day and night.”

Plants measure these day and night oscillations as well as seasonal changes. Knowledge already existed of the initial chemistry, biology and physiology of that process.

In addition, Zoltowski and colleagues published in 2013 the discovery that the amino acids in Zeitlupe — working like a dimmer switch — gradually get more active as daytime turns to evening, thereby managing the 24-hour Circadian rhythm. Additionally, they found that FKF-1 is very different from Zeitlupe. FKF-1 switches on with morning light and measures seasonal changes, otherwise called photoperiodism.

But a knowledge gap remained. It was a mystery how the information is integrated by the organism.

“Ultimately that has to be related to some kind of chemical event occurring, some kind of chemical timekeeper,” Zoltowski said. “So by following that trail we figured out how the chemistry works.”

Dark state and light state snapshots
The problem required a two-pronged approach: Solving the structure of the protein to understand how forming and breaking bonds changes how the organism perceives its environment; and solving the chemistry, specifically the crystal structures of the protein’s dark and light states.

That process yielded a snapshot of the protein in the dark state and a snapshot of the protein in the light state, so the researchers could watch changes in protein structure in response to the bond-forming event.

From there, the researchers made mathematical models 1) that explain how the chemistry of the bond breaking and bond forming event, and the rate at which it occurs, should affect the organism; and 2) that design mutations to the protein that affect how it goes from the dark state to the light state to block that process.

Standard techniques yielded the discovery
The team used a few standard techniques. To get at the chemistry, they deployed ultra-violet visible spectroscopy to measure how efficiently proteins absorb light. They followed differences in the absorption spectrum, seeing what wavelengths are absorbed, to track chemical changes between the dark and the light states.

On the structure side, they crystallized the proteins and collected data at synchrotron sources at Cornell University, then mapped out like a puzzle where all the electrons are located in the crystal. From there they could fit and build — amino acid by amino acid — the protein, yielding a three-dimensional image of where every atom in the protein is located.

“This gives us pictures and snapshots of all those discrete events, where then we can look at how the atoms are moving and changing from one to the other,” Zoltowski said. “That allows us to see the bonds forming, the bonds breaking, and how the rest of the protein changes in response to that.”

Why didn’t we think of that?
The question has been an important one in the field, but challenging technical hurdles thwarted solutions, said Zoltowski. The key for his team was persistence and years of experience.

“This is not an easy protein to work with — it’s difficult to get crystals of these proteins. It requires a protein that is stable enough and will interact in a way that it yields a perfectly ordered crystal. So it’s difficult to do the chemistry and the structures. Researchers have struggled with getting adequate amounts of protein to be able to do these types of characterizations,” he said.

Think of it like a diamond, Zoltowski said, which is a perfectly ordered crystal that is just carbon atoms arranged in a specific way.

“Zeitlupe and FKF-1 have thousands of atoms in each protein, and in order to get a crystal, each molecule of the protein needs to arrange itself with the same type of accuracy and precision as carbon atoms in a diamond. Getting that to occur, where they pack nicely together, is non trivial. And some proteins just are really challenging to work with.”

Zoltowski and his colleagues have been fortunate in having years of experience working with these families of proteins, called the Light-oxygen-voltage-sensing domains, or LOV domains, for short.

“So we’ve developed a lot of skills and techniques over the years that can get over some of the technical hurdles,” he said. “So just from gaining experience over time, we’ve gotten better with working with some very difficult proteins. It makes something that is challenging, much more tractable for our lab.”

Does this apply to all LOV proteins in every plant?
Zeitlupe is a German word that means slow motion. The protein was dubbed Zeitlupe because scientists discovered when they found mutations of this protein previously that it made the Circadian clock run slower. It naturally altered the way the organism perceived time.

“We wanted to understand the proteins well enough that we could selectively alter the chemistry, or selectively alter the structure, to create mutations that would be testable in the organism,” Zoltowski said. “We wanted a predictive model that would tell us that these mutations that affect the kinetics — the rate at which this bond breaks — should do ‘X’ in the organism.”

The team’s new discovery results in hybrid plants — something nature already does and has done for millions of years through the process of evolution so that plants adapt to survive.

“We’re not putting anything into the plant or changing its genetics,” Zoltowski said. “We’re making a very subtle, targeted mutation to a specific protein that already is a native plant protein — and one that we’ve shown in this paper has evolved considerably throughout various different agricultural crops to already do this.”

The discovery gives scientists the ability to rationally interpret environmental information affecting a plant in order to introduce mutations, instead of relying on selective breeding to achieve a targeted mutation to generate phenotypes that potentially allow the plant to grow in a different environment.

What’s next?
The research opens a lot of new doors, including new questions about how these proteins are changing their configuration and how other variables, like oxidative stress, couple with the plant’s global sensory networks to also alter proteins and send multiple signals from the environment.

“What we’ve learned is that you need to pay careful attention to specific parts of the protein because they’re modulating activity selectively in different categories of this family,” Zoltowski said. “If we look at the whole family of these proteins, there are key amino acids that are evolutionarily selected, so they evolve specific modulations of this activity for their own independent niche in the environment. One of the take-homes is there are areas in the protein we need to look at to see how the amino acids are now different.”

Besides the NIH grant, the lab operates with $250,000 from the American Chemical Society’s Herman Frasch Foundation for Chemical Research Grants in Agricultural Chemistry. — Margaret Allen

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SMU Guildhall and cancer researchers level up to tap human intuition of video gamers in quest to beat cancer

Massive computational power of online “Minecraft” gaming community bests supercomputers

Video gamers have the power to beat cancer, according to cancer researchers and video game developers at Southern Methodist University, Dallas.

SMU researchers and game developers are partnering with the world’s vast network of gamers in hopes of discovering a new cancer-fighting drug.

Biochemistry professors Pia Vogel and John Wise in the SMU Department of Biological Sciences, and Corey Clark, deputy director of research at SMU Guildhall, are leading the SMU assault on cancer in partnership with fans of the popular best-selling video game “Minecraft.”

Vogel and Wise expect deep inroads in their quest to narrow the search for chemical compounds that improve the effectiveness of chemotherapy drugs.

“Crowdsourcing as well as computational power may help us narrow down our search and give us better chances at selecting a drug that will be successful,” said Vogel. “And gamers can take pride in knowing they’ve helped find answers to an important medical problem.”

Up to now, Wise and Vogel have tapped the high performance computing power of SMU’s Maneframe, one of the most powerful academic supercomputers in the nation. With ManeFrame, Wise and Vogel have sorted through millions of compounds that have the potential to work. Now, the biochemists say, it’s time to take that research to the next level — crowdsourced computing.

A network of gamers can crunch massive amounts of data during routine gameplay by pairing two powerful weapons: the best of human intuition combined with the massive computing power of networked gaming machine processors.

Taking their research to the gaming community will more than double the amount of machine processing power attacking their research problem.

“With the distributed computing of the actual game clients, we can theoretically have much more computing power than even the supercomputer here at SMU,” said Clark, also adjunct research associate professor in the Department of Biological Sciences. SMU Guildhall in March was named No. 1 among the Top 25 Top Graduate Schools for Video Game Design by The Princeton Review.

“If we take a small percentage of the computing power from 25,000 gamers playing our mod we can match ManeFrame’s 120 teraflops of processing power,” Clark said. “Integrating with the ‘Minecraft’ community should allow us to double the computing power of that supercomputer.”

Even more importantly, the gaming community adds another important component — human intuition.

Wise believes there’s a lot of brainpower eager to be tapped in the gaming community. And human brains, when tackling a problem or faced with a challenge, can make creative and intuitive leaps that machines can’t.

“What if we learn things that we never would have learned any other way? And even if it doesn’t work it’s still a good idea and the kids will still get their endorphin kicks playing the game,” Wise said. “It also raises awareness of the research. Gamers will be saying ‘Mom don’t tell me to go to bed, I’m doing scientific research.”

The Vogel and Wise research labs are part of the Center for Drug Discovery, Design and Delivery (CD4) in SMU’s Dedman College. The center’s mission is a novel multi-disciplinary focus for scientific research targeting medically important problems in human health. Their research is funded in part by the National Institutes of Health.

The research question in play
Vogel and Wise have narrowed a group of compounds that show promise for alleviating the problem of chemotherapy failure after repeated use. Each one of those compounds has 50 to 100 — or even more — characteristics that contribute to their efficacy.

“Corey’s contribution will hopefully tell us which dozen perhaps of these 100 characteristics are the important ones,” Vogel said. “Right now of those 100 characteristics, we don’t know which ones are good ones. We want to see if there’s a way with what we learn from Corey’s gaming system to then apply what we learn to millions of other compounds to separate the wheat from the chaff.”

James McCormick — a fifth year Ph.D. student in cellular molecular biology who earned his doctoral degree this spring and is a researcher with the Center for Drug Discovery, Design and Delivery — produced the data set for Clark and Guildhall.

Lauren Ammerman, a first-year Ph.D. student in cellular and molecular biology and also working in the Center for Drug Discovery, Design and Delivery, is taking up the computational part of the project.

Machines can learn from human problem solving
Crowdsourcing video gamers to solve real scientific problems is a growing practice.

Machine learning and algorithms by themselves don’t always find the best solution, Clark said. There are already examples of researchers who for years sought answers with machine learning, then switched to actual human gamers.

Gamers take unstructured data and attack it with human problem-solving skills to quickly find an answer.

“So we’re combining both,” Clark said. “We’re going to have both computers and humans trying to find relationships and clustering the data. Each of those human decisions will also be supplied as training input into a deep neural network that is learning the ‘human heuristic’ — the technique and processes humans are using to make their decisions.”

Gamers already have proven they can solve research problems that have stymied scientists, says Vogel. She cites the video game “Foldit” created by the University of Washington specifically to unlock the structure of an AIDS-related enzyme.

Some other Games With A Purpose, as they’re called, have produced similar results. Humans outperform computers when it comes to tasks in the computational process that are particularly suited to the human intellect.

“With ‘Foldit,’ researchers worked on a problem for 15 years using machine learning techniques and were unable to find a solution,” Clark said. “Once they created the game, 57,000 players found a solution in three weeks.”

Modifying the “Minecraft” game and embedding research data inside
Gamers will access the research problem using the version of “Minecraft” they purchased, then install a “mod” or “plugin” — gamer jargon for modifying game code to expand a game’s possibilities — that incorporates SMUs research problem and was developed in accordance with “Minecraft” terms of service. Players will be fully aware of their role in the research, including ultimately leaderboards that show where players rank toward analyzing the data set in the research problem.

SMU is partnering with leaders in the large “Minecraft” modding community to develop a functioning mod by the end of 2017. The game will be heavily tested before release to the public the second quarter of 2018, Clark said.

The SMU “Minecraft” mod will incorporate a data processing and distributed computing platform from game technology company Balanced Media Technology (BMT), McKinney, Texas. BMT’s HEWMEN software platform executes machine-learning algorithms coupled with human guided interactions. It will integrate Wise and Vogel’s research directly into the SMU “Minecraft” mod.

SMU Guildhall will provide the interface enabling modders to develop their own custom game mechanic that visualizes and interacts with the research problem data within the “Minecraft” game environment. Guildhall research is funded in part by Balanced Media Technology.

“We expect to have over 25,000 people continuously online during our testing period,” Clark said. “That should probably double the computing power of the supercomputer here.”

That many players and that much computing power is a massive resource attacking the research problem, Wise said.

“The SMU computational system has 8,000 computer cores. Even if I had all of ManeFrame to myself, that’s still less computing and brainpower than the gaming community,” he said. “Here we’ve got more than 25,000 different brains at once. So even if 24,000 don’t find an answer, there are maybe 1,000 geniuses playing ‘Minecraft’ that may find a solution. This is the most creative thing I’ve heard in a long time.” — Margaret Allen, SMU

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SMU Research Day 2017 visitors query SMU students on the details of their research

The best in SMU undergraduate and graduate research work was on full display at Research Day in the Hughes Trigg Student Center.

More than 150 graduate and undergraduate students at SMU presented posters at SMU Research Day 2017 in the Promenade Ballroom of Hughes-Trigg Student Center Ballroom on March 28.

Student researchers discussed their ongoing and completed SMU research and their results with faculty, staff and students who attended the one-day event.

Explaining their research to others is a learning experience for students, said Peter Weyand, Glenn Simmons Professor of Applied Physiology and professor of biomechanics in the Department of Applied Physiology and Wellness in SMU’s Annette Caldwell Simmons School of Education and Human Development.

“Research Day is an opportunity for SMU students to show off what they’ve been doing at the grad level and at the undergrad level,” Weyand said, “and that’s really an invaluable experience for them.”

Posters and presentations spanned more than 20 different fields from the Annette Caldwell Simmons School of Education & Human Development, the Bobby B. Lyle School of Engineering, Dedman College of Humanities and Sciences and SMU Guildhall.

“It’s a huge motivation to present your work before people,” said Aparna Viswanath, a graduate student in engineering. Viswanath presented research on “Looking Around Corners,” research into an instrument that converts a scattering surface into computational holographic sensors.

The goal of Research Day is to foster communication about research between students in different disciplines, give students the opportunity to present their work in a professional setting, and to share the outstanding research being conducted at SMU.

The annual event is sponsored by the SMU Office of Research and Graduate Studies.

View highlights of the presentations on Facebook.

Some highlights of the research:

  • Adel Alharbi, a student of Dr. Mitchell Thornton in Lyle School’s Computer Science and Engineering presented research on a novel demographic group prediction mechanism for smart device users based upon the recognition of user gestures.
  • Ashwini Subramanian and Prasanna Rangarajan, students of Dr. Dinesh Rajan, in Lyle School’s Electrical Engineering Department, presented research about accurately measuring the physical dimensions of an object for manufacturing and logistics with an inexpensive software-based Volume Measurement System using the Texas Instruments OPT8241 3D Time-of-Flight camera, which illuminates the scene with a modulated light source, observing the reflected light and translating it to distance.
  • Gang Chen, a student of Dr. Pia Vogel in the Department of Chemistry of Dedman College, presented research on multidrug resistance in cancers associated with proteins including P-glycoprotein and looking for inhibitors of P-gp.
  • Tetiana Hutchison, a student of Dr. Rob Harrod in the Chemistry Department of Dedman College, presented research on inhibitors of mitochondrial damage and oxidative stress related to human T-cell leukemia virus type-1, an aggressive hematological cancer for which there are no effective treatments.
  • Margarita Sala, a student of Dr. David Rosenfield and Dr. Austin Baldwin in the Psychology Department of Dedman College, presented research on how specific post-exercise affective states differ between regular and infrequent exercisers, thereby elucidating the “feeling better” phenomenon.
  • Bernard Kauffman, a Level Design student of Dr. Corey Clark in SMU Guildhall, presented research on building a user interface that allows video game players to analyze vast swaths of scientific data to help researchers find potentially useful compounds for treating cancer.

Browse the Research Day 2017 directory of presentations by department.

See the SMU Graduate Studies Facebook page for images of 2017 Research Day.

See the SMU Anthropology Department photo album of Research Day 2017 poster presentations.

According to the Fall 2016 report on Undergraduate Research, SMU provides opportunities for student research in a full variety of disciplines from the natural sciences and engineering, to social sciences, humanities and the arts. These opportunities permit students to bring their classroom knowledge to practical problems or a professional level in their chosen field of study.
Opportunities offered include both funded and curricular programs
that can be tailored according to student needs:

  • Students may pursue funded research with the assistance of a
    variety of campus research programs. Projects can be supported
    during the academic year or in the summer break, when students
    have the opportunity to focus full-time on research.
  • Students may also enroll in research courses that are offered in
    many departments that permit them to design a unique project,
    or participate in a broader project.
  • Students can take advantage of research opportunities outside
    of their major, or design interdisciplinary projects with their faculty
    mentors. The Dedman College Interdisciplinary Institute supports
    such research via the Mayer Scholars.
  • View videos of previous SMU Research Day events:

    See Research Day winners from 2017, 2016, 2015 and 2014.

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    Researchers test blood flow in athletes’ brains to find markers that diagnose concussions

    Diagnosing concussions is difficult because it typically rests on subjective symptoms such as forgetfulness, wobbly gait and disorientation or loss of consciousness. A new study of college athletes investigates objective indicators using Doppler ultrasound to measure brain blood flow and blood vessel function.

    A hard hit to the head typically prompts physicians to look for signs of a concussion based on symptoms such as forgetfulness, wobbly gait and disorientation.

    But symptoms such as those are subjective. And youth who are anxious to get back to their sport can sometimes hide the signs in order to brush off adult concerns, says physiologist Sushmita Purkayastha, Southern Methodist University, Dallas.

    Now a new study funded by the Texas Institute for Brain Injury and Repair at U.T. Southwestern Medical Center, Dallas aims to find noninvasive objective indicators to diagnose whether an athlete has suffered a concussion. Using transcranial Doppler ultrasound, the study will probe the brains of college athletes to measure blood vessel function in the brain, looking for tell-tale signs related to blood flow that help diagnose concussion, said Purkayastha, a researcher on the new study.

    “We know this is an understudied area. With other health problems, when the doctor suspects diabetes or hypertension, they don’t guess, they run objective tests to confirm the diagnosis. But that’s not the case with concussion — yet,” said Purkayastha, whose research expertise is blood flow regulation in the human brain. “That’s why my research focus is to find markers that are objective and not subjective. And this method of monitoring blood flow in the brain with ultrasound is noninvasive, inexpensive and there’s no radiation.”

    Purkayastha and others on the research team are working under a one-year, $150,000 pilot research grant from the Texas Institute for Brain Injury and Repair, a UT Southwestern initiative funded by the Texas Legislature to enhance the diagnosis and treatment of brain injuries.

    The team will observe 200 male and female college athletes over the next two years. Half the athletes will be students playing a contact-collision sport who have recently suffered a sports-related concussion. The other half, a control group, will be students playing a contact-collision sport who don’t have a concussion. The study draws on athletes from football, soccer, equestrian sports, cheerleading and recreational sports.

    The researchers began testing subjects in August. They expect to have results by the Fall of 2017.

    “We are very excited at establishing this collaboration between SMU and the Physical Medicine and Rehabilitation Department at UTSW. Our work with Dr. Purkayastha promises to give meaningful insight into the role of cerebral blood flow mechanisms after concussion and will point us in the right direction for improved neurorecovery,” said physician Kathleen Bell, a leading investigator at U.T. Southwestern’s Texas Institute for Brain Injury and Repair and principal investigator on the study. Bell is a nationally recognized leader in rehabilitation medicine and a specialist in neurorehabilitation.

    Diagnosing concussions by using objective, non-invasive and inexpensive markers will result in accurate diagnosis and better return-to-play decisions following a concussion, thereby preventing the long-term risk of second-impact syndrome, said Purkayastha, an assistant professor in the Department of Applied Physiology and Wellness of SMU’s Annette Caldwell Simmons School of Education and Human Development.

    “Although sports-related concussions are common, the physiology of the injury is poorly understood, and hence there are limited treatments currently available,” she said.

    Hemorrhage or blackouts result, for example, if autoregulation malfunctions
    While the brain is the most important organ in the body, it has been very understudied, said Purkayastha, a professor in the Simmons School of Education & Human Development. But since blood vessels in the brain behave similarly to those in the rest of the body, it’s possible to measure blood vessel function in the brain by monitoring blood pressure and brain blood flow. Observing those functions could reveal a marker, she said.

    In Purkayastha’s lab on the SMU campus, student athletes are being outfitted with two small ultrasound probes, one on each side of their forehead in the temple area, to test blood vessel function. Specifically, the two probes monitor the blood flow through middle cerebral artery, which supplies blood to 75 percent of the brain. The artery traverses the brain, circulating blood to the brain tissues responsible for movement, cognition and decision-making.

    Branching from the middle cerebral artery is a network of blood vessels that get smaller and smaller as they get further from the artery, spreading like tree branches through the brain. The smallest vessels — via a different local regulatory mechanism — maintain constant blood flow to the brain, making microadjustments, such as constricting and dilating in the face of constant changes in blood pressure. Adjustments occur as a person’s muscles move, whether standing, sitting, exercising, or even just laughing and experiencing emotion. These continual adjustments in the vessels — called cerebral autoregulation — keep blood flow constant and regular. That prevents problems such as hemorrhaging or passing out from large fluctuations in blood pressure that is either too high or too low.

    Researchers suspect concussion diminishes a vessels ability to properly regulate blood flow
    In the current study, ultrasound probes on the temples record the vessels’ microadjustments as digital data. That information is processed through a WinDaq data acquisition software and analyzed to examine cerebral autoregulation with spontaneous changes in blood pressure during that period of time.

    Unlike at the doctor’s office, when a cuff is used to measure blood pressure at a rate of single measurements during 30 seconds, Purkayastha’s ultrasound monitoring of blood pressure provides continuous blood pressure recording throughout each heartbeat. As sound waves bounce into the artery and send back an echo, they measure the speed of red blood cells and other blood components moving through the artery.

    “We collect 10 minutes of very high frequency data points collecting information on beat-to-beat changes in blood pressure and blood flow to the brain for every single heartbeat,” said Purkayastha. “Then we analyze and post-process and examine how well the blood vessels were able to maintain constant blood flow to the brain. We suspect in people with concussion that the autoregulation function isn’t operating properly which leads to impairments in function such as wobbly gait, disorientation or forgetfulness. This is a noninvasive way to see if there’s a flaw in the autoregulation.”

    Athletes with confirmed diagnosis of concussions will be tested three times during the course of the study. The first test is three days after a suspected concussion, the second is 21 days afterward, and the third is three months afterward.

    “The pilot studies so far look promising and our goal is to better understand the mechanism behind injury and design objective markers detecting concussion,” said Purkayastha.

    The Texas Institute for Brain Injury and Repair at U.T. Southwestern Medical Center, a component of the Harold and Annette Simmons Comprehensive Center for Research and Treatment in Brain and Neurological Disorders, is a collaborative initiative involving local and national organizations, including the National Institutes of Health, University of Texas Dallas and its Center for BrainHealth, Children’s Medical Center, Dallas VA Medical Center, and Parkland Health and Hospital System, as well as Texas Health Resources and Texas Health Ben Hogan Sports Medicine. — Margaret Allen, SMU

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    SMU biochemists, students probe membrane proteins that thwart cancer chemotherapies

    “Recurring cancers have ‘learned’ how to evade chemotherapy by pumping it out of the cancer cells so that only sub-therapeutic concentrations remain in the cell, making the drug useless.” — SMU biochemist Pia Vogel

    The SMU undergraduate students and Dallas-area high school students get hands-on experience working on cancer research in the combined SMU Department of Biological Sciences laboratories of Wise and Vogel.

    The researchers and students are working to find ways to treat cancer patients whose cancer has either returned after initial chemotherapy or was initially hard to treat using chemotherapeutics. The research is funded in part by the National Institutes of Health.

    SMU Cancer Research

    Students recently in the lab included Victoria Bennet, Hockaday School, and Shaffin Siddiqui and Robert Luo, both from Highland Park High School. SMU undergraduates included Hamilton Scholar Alexis Sunshine, Clinton Osifo, Stefanie Lohse, Brianna Ramirez, Henry Thornton, Shirely Liu, Justin Musser, Jake Oien and Michael Fowler. Also currently working in the lab are M.S. student and Hamilton Scholar Collette Marchesseau (2016 SMU graduate), and Ph.D. students Amila Nanayakkara, Mike Chen, Courtney Follit, Maisa Oliveira and James McCormick.

    “Often, recurring cancers have ‘learned’ how to evade chemotherapy by pumping the therapeutic out of the cancer cells so that only sub-therapeutic concentrations remain in the cell, making the drug useless,” said Vogel, a professor and director of the SMU interdisciplinary research institute, the Center for Drug Discovery, Design and Delivery.

    The pumps that do the work are proteins that span the cell membranes and use the biological fuel ATP to actively pump chemotherapeutics and other toxins out of the cells.

    “We like to compare these proteins to biological sump pumps,” said Wise, associate professor.

    Wise and Vogel use a combination of computational, biochemical and human cell-based techniques to find new drug-like compounds that inhibit the action of the pumps. If successful, the novel drugs — or derivatives of them — will be given to patients with therapy-resistant cancer together with the chemotherapeutic.

    “Since our novel compounds block the pumps, the chemotherapeutic will remain in the cell and kill the cancer that had not been treatable previously,” Vogel said.

    The researchers have discovered drug-like compounds that can be modified and developed into medicines that target the protein, called P-glycoprotein.

    The SMU researchers discovered the compounds after virtually screening more than 10 million small drug-like compounds made publically available in digital form from the pharmacology database Zinc at the University of California, San Francisco.

    Using SMU’s Maneframe high performance computer, Wise ran the compounds through a computer-generated model of the protein. The virtual model, designed and built by Wise, is the first computational microscope of its kind to simulate the actual behavior of P-glycoprotein in the human body, including interactions with drug-like compounds while taking on different shapes. The promising compounds were then tested in the lab.

    “We have been quite successful and already have identified close to 20 novel compounds that block the pumps in our cell-based assays,” said Wise. “In these experiments we culture therapy-resistant prostate or ovarian or colon cancer cells in the lab and then show that we can kill these cancer cells using normal amounts of commonly available therapeutics in the presence of our novel compounds — even though in the absence of our novel compounds, the cancer cells would not be treatable.”

    A pharmaceutical hit compound, like those discovered by Vogel and her co-authors, is a compound that is a promising candidate for chemical modification so it can eventually be delivered to patients as a therapeutic drug. In the case reported here, the compounds were commercially available for testing. The timeline from drug discovery to development to clinical trials and approval can take a decade or more.

    SMU undergraduates and high school students experience world-class research
    SMU undergraduate and high school students have been involved in different aspects of the research. Typically the beginning students work together with graduate or advanced undergraduate students to learn techniques used in the lab.

    Some perform small research projects. Others have simply learned state-of-the-art techniques and “how science works” in the context of critical human health problems.

    “High school student Robert Luo was interested in the computational side of our work, so he’s worked with senior SMU Ph.D. candidate James McCormick on trying to evaluate how strongly one of the therapy-sensitizing compounds we found potentially interacts with the pump protein at different proposed binding sites,” said Wise. “It is actually a significant project and will help with our research.”

    The opportunities available for students to learn how science works using high performance computing, biochemistry and cell biology can be valuable even for those who won’t necessarily become practicing scientists, said Wise, citing as an example a recent SMU graduate who previously worked in the lab.

    Ketetha Olengue (SMU ’15) is a good example,” he said. “She is now in her second year at the Keck School of Medicine at the University of Southern California, where she is pursuing her M.D. degree in a novel program with USC Engineering.” — Margaret Allen, SMU

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    Nearby massive star explosion 30 million years ago equaled brightness of 100 million suns

    Analysis of exploding star’s light curve and color spectrum reveal spectacular demise of one of the closest supernova to Earth in recent years; its parent star was so big it’s radius was 200 times larger than our sun

    A giant star that exploded 30 million years ago in a galaxy near Earth had a radius prior to going supernova that was 200 times larger than our sun, according to astrophysicists at Southern Methodist University, Dallas.

    The sudden blast hurled material outward from the star at a speed of 10,000 kilometers a second. That’s equivalent to 36 million kilometers an hour or 22.4 million miles an hour, said SMU physicist Govinda Dhungana, lead author on the new analysis.

    The comprehensive analysis of the exploding star’s light curve and color spectrum have revealed new information about the existence and sudden death of supernovae in general, many aspects of which have long baffled scientists.

    “There are so many characteristics we can derive from the early data,” Dhungana said. “This was a big massive star, burning tremendous fuel. When it finally reached a point its core couldn’t support the gravitational pull inward, suddenly it collapsed and then exploded.”

    The massive explosion was one of the closest to Earth in recent years, visible as a point of light in the night sky starting July 24, 2013, said Robert Kehoe, SMU physics professor, who leads SMU’s astrophysics team.

    The explosion, termed by astronomers Supernova 2013ej, in a galaxy near our Milky Way was equal in energy output to the simultaneous brightness of 100 million of the Earth’s suns.

    The star was one of billions in the spiral galaxy M74 in the constellation Pisces.

    Considered close by supernova standards, SN 2013ej was in fact so far away that light from the explosion took 30 million years to reach Earth. At that distance, even such a large explosion was only visible by telescopes.

    Dhungana and colleagues were able to explore SN 2013ej via a rare collection of extensive data from seven ground-based telescopes and NASA’s Swift satellite.

    The data span a time period prior to appearance of the supernova in July 2013 until more than 450 days after.

    The team measured the supernova’s evolving temperature, its mass, its radius, the abundance of a variety of chemical elements in its explosion and debris and its distance from Earth. They also estimated the time of the shock breakout, the bright flash from the shockwave of the explosion.

    The star’s original mass was about 15 times that of our sun, Dhungana said. Its temperature was a hot 12,000 Kelvin (approximately 22,000 degrees Fahrenheit) on the tenth day after the explosion, steadily cooling until it reached 4,500 Kelvin after 50 days. The sun’s surface is 5,800 Kelvin, while the Earth’s core is estimated to be about 6,000 Kelvin.

    The new measurements are published online here in the May 2016 issue of The Astrophysical Journal, “Extensive spectroscopy and photometry of the Type IIP Supernova 2013j.”

    Shedding new light on supernovae, mysterious objects of our universe
    Supernovae occur throughout the universe, but they are not fully understood. Scientists don’t directly observe the explosions but instead detect changes in emerging light as material is hurled from the exploding star in the seconds and days after the blast.

    Telescopes such as SMU’s robotic ROTSE-IIIb telescope at McDonald Observatory in Texas, watch our sky and pick up the light as a point of brightening light. Others, such as the Hobby Eberly telescope, also at McDonald, observe a spectrum.

    SN 2013ej is M74’s third supernova in just 10 years. That is quite frequent compared to our Milky Way, which has had a scant one supernova observed over the past 400 years. NASA estimates that the M74 galaxy consists of 100 billion stars.

    M74 is one of only a few dozen galaxies first cataloged by the astronomer Charles Messier in the late 1700s. It has a spiral structure — also the Milky Way’s apparent shape — indicating it is still undergoing star formation, as opposed to being an elliptical galaxy in which new stars no longer form.

    It’s possible that planets were orbiting SN 2013ej’s progenitor star prior to it going supernova, in which case those objects would have been obliterated by the blast, Kehoe said.

    “If you were nearby, you wouldn’t know there was a problem beforehand, because at the surface you can’t see the core heating up and collapsing,” Kehoe said. “Then suddenly it explodes — and you’re toast.”

    Distances to nearby galaxies help determine cosmic distance ladder
    Scientists remain unsure whether supernovae leave behind a black hole or a neutron star like a giant atomic nucleus the size of a city.

    “The core collapse and how it produces the explosion is particularly tricky,” Kehoe said. “Part of what makes SN 2013ej so interesting is that astronomers are able to compare a variety of models to better understand what is happening. Using some of this information, we are also able to calculate the distance to this object. This allows us a new type of object with which to study the larger universe, and maybe someday dark energy.”

    Being 30 million light years away, SN 2013ej was a relatively nearby extragalactic event, according to Jozsef Vinko, astrophysicist at Konkoly Observatory and University of Szeged in Hungary.

    “Distances to nearby galaxies play a significant role in establishing the so-called cosmic distance ladder, where each rung is a galaxy at a known distance.”

    Vinko provided important data from telescopes at Konkoly Observatory and Hungary’s Baja Observatory and carried out distance measurement analysis on SN 2013ej.

    “Nearby supernovae are especially important,” Vinko said. “Paradoxically, we know the distances to the nearest galaxies less certainly than to the more distant ones. In this particular case we were able to combine the extensive datasets of SN 2013ej with those of another supernova, SN 2002ap, both of which occurred in M74, to suppress the uncertainty of their common distance derived from those data.”

    Supernova spectrum analysis is like taking a core sample
    While stars appear to be static objects that exist indefinitely, in reality they are primarily a burning ball, fueled by the fusion of elements, including hydrogen and helium into heavier elements. As they exhaust lighter elements, they must contract in the core and heat up to burn heavier elements. Over time, they fuse the various chemical elements of the periodic table, proceeding from lightest to heaviest. Initially they fuse helium into carbon, nitrogen and oxygen. Those elements then fuel the fusion of progressively heavier elements such as sulfur, argon, chlorine and potassium.

    “Studying the spectrum of a supernova over time is like taking a core sample,” Kehoe said. “The calcium in our bones, for example, was cooked in a star. A star’s nuclear fusion is always forging heavier and heavier elements. At the beginning of the universe there was only hydrogen and helium. The other elements were made in stars and in supernovae. The last product to get created is iron, which is an element that is so heavy it can’t be burned as fuel.”

    Dhungana’s spectrum analysis of SN 2013ej revealed many elements, including hydrogen, helium, calcium, titanium, barium, sodium and iron.

    “When we have as many spectra as we have for this supernova at different times,” Kehoe added, “we are able to look deeper and deeper into the original star, sort of like an X-ray or a CAT scan.”

    SN 2013ej’s short-lived existence was just tens of millions of years
    Analysis of SN 2013ej’s spectrum from ultraviolet through infrared indicates light from the explosion reached Earth July 23, 2013. It was discovered July 25, 2013 by the Katzman Automatic Imaging Telescope at California’s Lick Observatory. A look back at images captured by SMU’s ROTSE-IIIb showed that SMU’s robotic telescope detected the supernova several hours earlier, Dhungana said.

    “These observations were able to show a rapidly brightening supernova that started just 20 hours beforehand,” he said. “The start of the supernova, termed ‘shock breakout,’ corresponds to the moment when the internal explosion crashes through the star’s outer layers.”

    Like many others, SN 2013ej was a Type II supernova. That is a massive star still undergoing nuclear fusion. Once iron is fused, the fuel runs out, causing the core to collapse. Within a quarter second the star explodes.

    Supernovae have death and birth written all over them
    Massive stars typically have a shorter life span than smaller ones.

    “SN 2013ej probably lived tens of millions of years,” Kehoe said. “In universe time, that’s the blink of an eye. It’s not very long-lived at all compared to our sun, which will live billions of years. Even though these stars are bigger and have a lot more fuel, they burn it really fast, so they just get hotter and hotter until they just gobble up the matter and burn it.”

    For most of its brief life, SN 2013ej would probably have burned hydrogen, which then fused to helium, burning for a few hundred thousand years, then perhaps carbon and oxygen for a few hundred days, calcium for a few months and silicon for several days.

    “Supernovae have death and birth written all over them,” Kehoe said. “Not only do they create the elements we are made of, but the shockwave that goes out from the explosion — that’s where our solar system comes from.”

    Outflowing material slams into clouds of material in interstellar space, causing it to collapse and form a solar system.

    “The heavy elements made in the supernova and its parent star are those which comprise the bulk of terrestrial planets, like Earth, and are necessary for life,” Kehoe said.

    Besides physicists in the SMU Department of Physics, researchers on the project also included scientists from the University of Szeged, Szeged, Hungary; the University of Texas, Austin, Texas; Konkoly Observatory, Budapest, Hungary; and the University of California, Berkeley, Calif. — Margaret Allen

    SMU is a nationally ranked private university in Dallas founded 100 years ago. Today, SMU enrolls nearly 11,000 students who benefit from the academic opportunities and international reach of seven degree-granting schools. For more information see www.smu.edu.

    SMU has an uplink facility located on campus for live TV, radio, or online interviews. To speak with an SMU expert or book an SMU guest in the studio, call SMU News & Communications at 214-768-7650.

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    SMU Research Day 2016: Students present their research to the SMU and Dallas community

    Day of presenting in Hughes-Trigg Student Center allows students to discuss their research, identify potential collaborators, discover other perspectives.

    SMU graduate and undergraduate students presented their research to the SMU community at the University’s Research Day 2016 on Feb. 10.

    Sponsored by the SMU Office of Research and Graduate Studies, the research spanned more than 20 different fields from schools across campus.

    The annual Research Day event fosters communication between students in different disciplines, gives students the opportunity to present their work in a professional setting, and allows students to share with their peers and industry professionals from the greater Dallas community the outstanding research conducted at SMU.

    A cash prize of $250 was awarded to the best poster from each department or judging group.

    View the list of student winners whose research was awarded a cash prize.

    View highlights of the presentations.

    Some highlights of the research:

    • Faris Altamimi, a student of Dr. Sevinc Sengor in Lyle School‘s Civil and Environmental Engineering Department, presented a study investigating experimental and modeling approaches for enhanced methane generation from municipal solid waste, while providing science-based solutions for cleaner, renewable sources of energy for the future.
    • Yongqiang Li and Xiaogai Li, students of Dr. Xin-Lin Gao in Lyle School’s Mechanical Engineering Department, are addressing the serious blunt trauma injury that soldiers on the battlefield suffer from ballistics impact to their helmets. The study simulated the ballistic performance of the Advanced Combat Helmet.
    • Audrey Reeves, Sara Merrikhihaghi and Kevin Bruemmer, students of Dr. Alexander Lippert, in the Chemistry Department of Dedman College, presented research on cell-permeable fluorescent probes in the imaging of enzymatic pathways in living cells, specifically the gaseous signaling molecule nitroxyl. Their research better understands nitroxyl’s role as an inhibitor of an enzyme that is key in the conversion of acetaldehyde to acetic acid.
    • Rose Ashraf, a student of Dr. George Holden in the Psychology Department of Dedman College, presented her research on harsh verbal discipline in the home and its prediction of child compliance. It was found permissive parents are least likely to elicit prolonged compliance.
    • Nicole Vu and Caitlin Rancher, students of Dr. Ernest N. Jouriles and Dr. Renee McDonald in the Psychology Department of Dedman College, presented research on children’s threat appraisals of interparental conflict and it’s relationship to child anxiety.

    See the full catalog of participants and their abstracts.

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    New fossils intensify mystery of short-lived, toothy mammals unique to ancient North Pacific

    Oddball creature, Desmostylia, from waters where “Deadliest Catch” TV show is filmed, ate like a vacuum cleaner and is new genus and species of the only order of marine mammals ever to go extinct — surviving a mere 23 million years

    Identification of a new species of the marine mammal Desmostylia has intensified the rare animal’s brief mysterious journey through prehistoric time, finds a new study.

    Desmostylians were a big, hippo-sized animal with a long snout and tusks. The new species is 23 million years old and has a unique tooth and jaw structure, said vertebrate paleontologist and study co-author Louis L. Jacobs, Southern Methodist University, Dallas.

    Those features indicate it was not only a vegetarian, but literally sucked vegetation from shorelines like a vacuum cleaner, Jacobs said.

    But unlike other marine mammals alive today — such as whales, seals and sea cows — desmostylians went totally extinct. Desmostylians, every single species combined, lived in an interval between 33 million and 10 million years ago.

    Its strange columnar teeth and odd style of eating don’t occur in any other animal, Jacobs said.

    The new specimens — from at least four individuals — were recovered from Unalaska, an Aleutian island in the North Pacific.

    While alive, the creatures lived in what is now Unalaska’s Dutch Harbor, where fishing boats depart on Discovery channel’s “Deadliest Catch” reality TV show.

    “The new animal — when compared to one of a different species from Japan — made us realize that desmos do not chew like any other animal,” said Jacobs, a professor in SMU’s Roy M. Huffington Department of Earth Sciences. “They clench their teeth, root up plants and suck them in.”

    To eat, the animals buttressed their lower jaw with their teeth against the upper jaw, and used the powerful muscles that attached there, along with the shape of the roof of their mouth, to suction-feed vegetation from coastal bottoms. Big muscles in the neck would help to power their tusks, and big muscles in the throat would help with suction.

    “No other mammal eats like that,” Jacobs said. “The enamel rings on the teeth show wear and polish, but they don’t reveal consistent patterns related to habitual chewing motions.”

    The new specimens also represent a new genus — meaning desmostylians in the same family diverged from one another in key physical characteristics, particularly the tooth and jaw structure, said Jacobs, who is one of 10 scientists collaborating on the research.

    Discovery of a new genus and species indicates the desmostylian group was larger and more diverse than previously known, said paleontologist and co-author Anthony Fiorillo, vice president of research and collections and chief curator at the Perot Museum of Nature and Science, Dallas, and an adjunct research professor at SMU.

    “Our new study shows that though this group of strange and extinct mammals was short-lived, it was a successful group with greater biodiversity than had been previously realized,” said Fiorillo.

    Unique from other marine mammals in their diet, eating, lifespan
    A large, stocky-limbed mammal, desmos’ modern relatives remain a mystery. They’ve been linked previously to manatees, horses and elephants.

    Compared to other mammals, desmos were latecomers and didn’t appear on earth until fairly recently — 33 million years ago. Also unusual for mammals, they survived a mere 23 million years, dying out 10 million years ago.

    Unlike whales and seals, but like manatees, desmos were vegetarians. They rooted around coastlines, ripping up vegetation, such as marine algae, sea grass and other near-shore plants.

    They probably swam like polar bears, using their strong front limbs to power along, Jacobs said. They walked on land a bit, lumbering like a sloth.

    Adult desmostylians were large enough to be relatively safe from predators.

    The authors report their discoveries in a special volume of the international paleobiology journal, Historical Biology. The article published online Oct.1 at http://bit.ly/1PQAHZJ.

    The research was funded by the Perot Museum of Nature and Science, U.S. National Park Service — Alaska Region Office, and SMU’s Institute for the Study of Earth and Man.

    Home was the North Pacific, on wave-battered “Deadliest Catch” island
    The newest desmo made its home on Unalaska Island, the farthest north of any occurrence of the group, which only lived along the shores of the North Pacific.

    “That’s the only place they’re known in the world — from Baja, California, up along the west coast of North America, around the Alaska Peninsula, the storm-battered Aleutian Islands, to Russia’s Kamchatka Peninsula and Sakhalin Island, to the Japanese islands,” Jacobs said.

    The Unalaska fossils represent at least four individuals, and one is a baby.

    “The baby tells us they had a breeding population up there,” Jacobs said. “They must have stayed in sheltered areas to protect the young from surf and currents.”

    In addition, “the baby also tells us that this area along the Alaska coast was biologically productive enough to make it a good place for raising a family,” said Fiorillo.

    Just as cattle assemble in a herd, and a group of fish is a school, multiple desmostylians constitute a “troll” — a designation selected by Jacobs to honor Alaskan Ray Troll, the artist who has depicted desmos most.

    To make the Unalaska and Japanese specimens readily available to scientists anywhere in the world, each fossil was modeled as a 3-D image to reconstruct the skull and provide interactive animations of the fossils, said Michael J. Polcyn, research associate and director of SMU’s Digital Earth Sciences Laboratory.

    Also, 3-D renders of the digital models are available to download without restriction at http://bit.ly/1JWbLLy, including instructions for downloading. The renderings are in QuickTime Virtual Reality format, QTVR, and are large files that take time to download. Once downloaded, each fossil can be virtually examined and manipulated.

    Journey from the land to the ocean to a quarry
    The first Unalaska fossils were discovered in the 1950s in a rock quarry during U.S. Geological Survey mapping.

    Others found more recently were on display at the Ounalashka Corporation headquarters. Those specimens were offered to Fiorillo and Jacobs for study after Fiorillo gave a public presentation to the community on his work in Alaska.

    “The fruits of that lecture were that it started the networking with the community, which in turn led us to a small, but very important collection of fossils that had been unearthed in the town when they built a school a few years earlier,” Fiorillo said. “The fossils were shipped to the Perot Museum of Nature and Science for preparation in our lab and those fossils are the basis for our work now.”

    From there, the researchers discovered that the fossils were a new genus and species.

    The researchers named the new mammal Ounalashkastylus tomidai. “Ounalashka,” means “near the peninsula” in the Aleut language of the indigenous people of the Aleutian Islands.

    “Stylus” is from the Latin for “column” and refers to the shape of cusps in the teeth.

    “Tomida” honors distinguished Japanese vertebrate paleontologist Yukimitsu Tomida.

    The article appears in a special volume of Historical Biology to honor the career accomplishments of Tomida upon his retirement from the Department of Geology and Paleontology in Tokyo’s National Museum of Nature and Science.

    In addition to Jacobs, Fiorillo and Polcyn, other authors were Yosuke Nishida, SMU; Yuri Kimura, Smithsonian Institution and the Tokyo Museum; Kentaro Chiba, University of Toronto; Yoshitsugu Kobayashi, Hokkaido University Museum, Naoki Kohno, National Museum of Nature and Science; and Kohei Tanaka, University of Calgary.

    The Historical Biology article is titled “A new desmostylian mammal from Unalaska (USA) and the robust Sanjussen jaw from Hokkaido (Japan), with comments on feeding in derived desmostylids.” It appears in the special issue “Contributions to vertebrate palaeontology in honour of Yukimitsu Tomida. — Margaret Allen

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    Culture, Society & Family Learning & Education Researcher news SMU In The News Videos

    WFAA: Can Technology Help Kids Learn to Read

    Technology helpful in motivating young struggling readers, particularly boys, to read — Dara Rossi

    SMU’s Dara Rossi was interviewed by the summer reading program Shelly’s Summer Bookworms for Dallas TV station WFAA.

    Rossi is a clinical assistant professor and director of SMU’s Teach for American Teacher Education Program in the Simmons School of Education and Human Development. She was asked how using technology can help young students learn to read.

    Rossi is an experienced educator with a strong science background, including K-12 curriculum development and administration.

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    Drugs behave as predicted in computer model of key protein, enabling cancer drug discovery

    New model allows pharmacological researchers to dock nearly any drug and see how it behaves in P-glycoprotein, a protein in the cell associated with failure of chemotherapy

    Drugs important in the battle against cancer responded the way they do in real life and behaved according to predictions when tested in a computer-generated model of one of the cell’s key molecular pumps — the protein P-glycoprotein, or P-gp.

    Biologists at Southern Methodist University, Dallas, developed the computer generated model to overcome the problem of relying on only static images for the structure of P-gp, said biologist John G. Wise, lead author on the journal article announcing the advancement.

    The new SMU model allows researchers to dock nearly any drug in the P-gp protein and see how it will actually behave in P-gp’s pump, said Wise, an associate professor in SMU’s Department of Biological Sciences.

    “The value of this fundamental research is that it generates dynamic mechanisms that let us understand something in biochemistry, in biology,” he said. “And by understanding P-gp in such detail, we can now think of ways to better and more specifically inhibit it.”

    P-gp is the cellular pump that protects cells by pumping out toxins. But that’s a problem when P-gp targets chemotherapy drugs as toxic, preventing chemo from killing cancer cells. Scientists are searching for ways to inhibit P-gp’s pumping action.

    The SMU researchers tested Tariquidar, a new P-gp inhibitor still in clinical trials. Inhibitors offer hope for stopping P-gp’s rejection of chemotherapeutics by stalling the protein’s pumping action. Pharmacology researchers disagree, however, on where exactly Tariquidar binds in P-gp.

    When run through the SMU model, Tariquidar behaved as expected: It wasn’t effectively pumped from the cell and the researchers observed that it prefers to bind high in the protein.

    “Now we have more details on how Tariquidar inhibits P-gp, where it inhibits and what it’s actually binding to,” Wise said.

    SMU researchers report that their computer model simulation reveals the binding sites of Tariquidar — a P-gp inhibitor —  as the “pump” opens and closes. (Image:  James McCormick)
    SMU researchers report that their computer model simulation reveals the binding sites of Tariquidar (orange blob) — a P-gp inhibitor. (Image: James McCormick)

    Also using the model, the researchers discovered greater detail than previously known about the behavior of other drugs as well, and how those drugs bind in P-gp to stop its pumping action.

    The study was funded in part by the National Institutes of Health. The lab was recently awarded a second NIH grant for the research.

    The findings are published in the journal Biochemistry. The article, “Multiple drug transport pathways through human P-glycoprotein,” is published online in advance of print at NIH’s PubMed Central.

    A still image of the modeled protein in action will appear on the cover of the October through December issues of Biochemistry.

    Testing the virtual P-gp model by virtually docking real drugs
    Wise and his colleagues tested one of the workhorse drugs of chemotherapy, daunorubicin, a close cousin of Adriamycin.

    An aggressive chemotherapeutic, daunorubicin stops DNA replication in the cell, and is a classic target for P-gp to pump out of a cell, Wise said.

    “For a long time, it’s been thought that there are at least a couple of distinct binding sites for drugs,” Wise said. “Sure enough, with our models, we found that daunorubicin, at least, prefers to bind on one side of the P-gp model, while verapamil – a commonly prescribed blood pressure medicine – prefers the other side.”

    SMU researchers report that their computer model simulation reveals the binding sites of Tariquidar — a P-gp inhibitor —  as the “pump” opens and closes. (Image:  James McCormick)
    SMU researchers report that their computer model simulation reveals the binding sites of Tariquidar (orange blob) — a P-gp inhibitor — as the “pump” opens and closes. (Image: James McCormick)

    Not only did the researchers show computationally that there are two different starting points for drugs, they also showed that there are two different pathways to get the drugs through.

    “The two different drugs start at different sites and they’re funneled to the outside by being pushed by the protein,” Wise said. “But the actual parts of the protein that are pushing the drugs out are different.”

    Wise and his co-authors, SMU biologists Pia Vogel and James McCormick, created the P-gp computer-generated simulation using SMU’s High Performance Computer, ManeFrame.

    Molecular model can aid in fight against multi-drug resistance of cancer cells
    The capability of watching molecular machinery up close, while doing its job the way it does in real life, may spark new drug discoveries to fight cancer.

    “Having an accurate model that actually moves – that shows the dynamics of the thing – is incredibly helpful in developing therapies against a molecular target to inhibit it. The only other ways to do it are blind, and the chances of success using blind methods are very low,” Wise said.

    “Scientists have tried for 30 years to find inhibitors of this pump and have done it without knowing the structure and with only little knowledge about the mechanism, screening more or less blindly for compounds that inhibit the thing,” Wise said. “They found drugs that worked in the test tube and that worked in cultured cells, but that didn’t work in the patient. With our model, because we can see the pump moving, we can probably predict better what’s going to make an inhibitor actually work well.”

    Vogel and Wise led a team of researchers in using the P-gp model to virtually screen millions of publically available drug-like compounds.

    Verapamil (green blob), inhibits the P-gp pump. But until now, the workings of the pump could not be observed so researchers could only speculate where Varapamil “binds” in P-gp. SMU researchers report that their computer model simulation reveals Varapamil’s binding sites while the “pump” opens and closes. (Image: McCormick)
    Verapamil (green blob), inhibits the P-gp pump. Until now, the workings of the pump could not be observed so researchers didn’t know exactly where Varapamil “binds” in P-gp. SMU researchers report that their simulation reveals the binding sites. (Image: McCormick)

    They discovered three new drug leads that could ultimately inhibit P-gp and offer better odds of survival to prostate cancer patients. The researchers reported those findings this month in the journal Pharmacology Research & Perspectives, http://bit.ly/1XGjN5w.

    New SMU model simulates molecular machinery in action
    Researchers look for drug compounds that can temporarily stop or inhibit the P-gp pump, so that the chemotherapy drugs that enter the cancer cell will stay there and do the job of killing the cancer. Finding the right pump inhibitor requires understanding the pumping action. That’s difficult without seeing the pump at work.

    The structures of proteins similar to P-gp have been previously available in a static state through X-ray crystallography. Scientists use X-ray crystallography as a tool that essentially draws the details of biological structures by identifying their atomic and molecular structure through diffraction of X-rays by the atoms themselves.

    Scientists often contribute the resulting protein structures to the U.S. Protein Data Bank repository for public use.

    Detailed data combined with several trillion calculations produced model
    To build the P-gp model, Wise used structures from the repository, showing various stages of transport, to simulate four points of reference. From there, SMU’s ManeFrame supercomputer was fed parameters and characteristics of the protein as well as how it should behave physically, including when kinetic energy was added to bring the protein and its surrounding membrane and water up to body temperature. The animated model resulted from calculating differences between two structures and using targeted molecular dynamics programs to slightly nudge the model to the next step.

    “You do that several million times and make several trillion calculations and you arrive at the next structure,” Wise said. “In this way, we can nudge P-gp through a full catalytic transport cycle.”

    Finally, using a docking program, the researchers individually introduced daunorubicin and other drugs into the protein, and watched the drugs move through P-gp’s catalytic cycle.

    “What happened was — the drugs moved,” Wise said. “And they moved the way they should move, clinically, biochemically, physiologically, to pump the compounds out of the cell.”

    Vogel added that, “in some of the zoom-ins of the model, you can actually see the amino acids paddle down the drugs.”

    Further challenging and testing the model
    The researchers ran a critical control to further test if the model worked.

    “We thought maybe anything you put in the protein, relevant or not, would get pumped through. So we put in something that is not a transport substrate of P-gp, something that biochemically would never be transported by P-gp,” Wise said. “We put it in, starting where daunorubicin is effectively pumped out, and very quickly the compound left the protein — but it left the opposite way, back into the cell. This experiment gave us more confidence that what we are seeing in these models is reflecting what happens in the cell.”

    Wise admits that until he saw it for himself, even he had doubts the virtual P-gp model would behave like real-life P-gp.

    “It’s a crude approximation of a complex, sophisticated human protein, but it’s so much better than the static images available now,” Wise said. “I’ve got to emphasize for all the disbelievers, for the ‘culture of doubters’ out there, that this model works — it moves the drugs through the membrane. That speaks for itself. What P-gp does in the cell, cancerous or normal, it does in our simulations.”

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    Researchers discover new drug-like compounds that may improve odds for men battling prostate cancer

    New drug-like compounds have low toxicity to noncancerous cells, but inhibit the human protein often responsible for chemotherapy failure

    Researchers at Southern Methodist University, Dallas, have discovered three new drug-like compounds that could ultimately offer better odds of survival to prostate cancer patients.

    The drug-like compounds can be modified and developed into medicines that target a protein in the human body that is responsible for chemotherapy resistance in cancers, said biochemist Pia D. Vogel, lead author on the scientific paper reporting the discovery.

    So far there’s no approved drug on the market that reverses cancer chemotherapy resistance caused by P-glycoprotein, or P-gp for short, said Vogel, a biochemistry professor at SMU. One potential drug, Tariquidar, is currently in clinical trials, but in the past, other potential drugs have failed at that stage.

    “The problem when a person has cancer, is that the treatment itself is composed of cellular toxins — the chemotherapeutics that prevent the cells from dividing. Usually upon the first chemotherapy treatment the cancer responds well, and initially goes away. Ideally it doesn’t come back,” said Vogel, director of SMU’s Center for Drug Discovery, Design and Delivery.

    Three drug-like compounds bind in human P-glycoprotein, reversing chemotherapy resistance in prostate cancer cells in culture. (Image, James McCormick)
    Three drug-like compounds bind in human P-glycoprotein, reversing chemotherapy resistance in prostate cancer cells in culture. (Image, James McCormick)

    “Sometimes, however, the cancer returns,” she said. “The reason often is that some of the cancer cells “learn,” after the first rounds of chemotherapy, how to make a lot of this P-gp pump. The normal function of P-gp is to pump toxins from cells, so it has evolved to protect cells against a large variety of toxins, including almost all currently available chemotherapeutics. After initial exposure, the cells surviving the chemo make so much P-gp that it allows the cells to pump the chemotherapy drugs straight back out of the cells during subsequent rounds of treatment.”

    As a result, P-gp causes resistance of the diseased cells to a majority of drugs currently available for the treatment of cancer, as well as drugs used for treatment of infectious diseases like HIV/AIDS.

    Using computer-generated model speeds up the drug discovery process
    The new drug-like compounds discovered by Vogel and her co-authors offer hope that using a computer-generated P-gp model, developed to accurately mimic the physical, chemical and biological functions of the protein in the human body, will speed up the drug discovery process and work in real life as well.

    P-glycoprotein's pumping action is stalled, when a drug-like compound (dark blue) prevents the power source (red) from being used by P-glycoprotein, the protein that transports toxins from a cell. (Image: James McCormick)
    P-glycoprotein’s pumping action is stalled, when a drug-like compound (dark blue) prevents the power source (red) from being used by P-glycoprotein, the protein that transports toxins from a cell. (Image: James McCormick)

    “These are not drugs yet. We still have to develop them before they can go in the clinic,” Vogel said. “But what we know now is that they’re not toxic — they have low toxicity to noncancerous cells, so that’s a pretty good predictor that they may be good candidates for drug development. But we need to do much more work.”

    A pharmaceutical hit compound, like those discovered by Vogel and her co-authors, is a compound that is a promising candidate for chemical modification so it can eventually be delivered to patients as a therapeutic drug. In the case reported here, the compounds were commercially available for testing. The timeline from drug discovery to development to clinical trials and approval can take a decade or more.

    Vogel and her co-authors, SMU biologist John G. Wise, and doctoral candidates Courtney A. Follit and Frances K. Brewer, reported their findings in the journal Pharmacology Research & Perspectives. The article, “In silico identified targeted inhibitors of P-glycoprotein in culture,” is published online at http://bit.ly/1JjFizg.

    The research was funded in part by the National Institutes of Health. The lab was recently awarded a second grant from the Institute.

    Researchers virtually screened 15 million drug-like compounds via SMU supercomputer
    The SMU researchers discovered the three hit compounds after virtually screening more than 15 million small drug-like compounds made publically available in digital form from the pharmacology database Zinc at the University of California, San Francisco.

    Using SMU’s ManeFrame high performance computer, Wise ran the compounds through a computer-generated model of P-gp. The virtual model, designed and built by Wise, is the first computational microscope of its kind to simulate the actual behavior of P-gp in the human body, including interactions with drug-like compounds while taking on different shapes.

    The ultra-high throughput computational searches by ManeFrame led the researchers to 300 compounds that looked like they may inhibit P-gp. The researchers then tested 38 of those in their physical lab and found four that inhibited the biochemical function of P-gp, stopping it in its action.

    Each of the four compounds was then tested in the lab to see how it would affect a line of prostate cancer cells relatively sensitive to the chemotherapeutic Paclitaxel, commonly used to treat prostate cancer patients. Also, each was tested on a companion cell line already multi-drug resistant, as if the patient already had undergone chemotherapy using Paclitaxel.

    The researchers found that with three of the four compounds, they were able to push back the sensitivity of the resistant cancer line to the level of the non-resistant one.

    “So the compounds re-sensitized the cancer cell lines to a really high degree, just as if the cancer was seeing the chemotherapy for the first time,” Vogel said.

    About 14 percent of men will be diagnosed over their lifetime with prostate cancer, according to the National Cancer Institute. Survival is highest if diagnosed early before it has spread, the institute reports.

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    Fermilab experiment observes change in neutrinos from one type to another over 500 miles

    Scientists have sorted through millions of cosmic ray strikes and zeroed in on neutrino interactions in their quest to learn more about the abundant yet mysterious particles that flit through ordinary matter as though it isn’t there.

    Initial data from a new U.S.–based physics experiment indicates scientists are a step closer to understanding neutrinos, the second most abundant particle in the universe.

    Neutrinos are little understood, but indications are they hold clues to why matter overwhelmingly survived after the Big Bang instead of just energy in the form of light.

    The first data from NOvA, the experiment in northern Minnesota, indicates that NOvA’s massive particle detector — designed to observe and measure the behavior of neutrinos — is functioning as planned.

    “In the 18 or so months the experiment has been up and running we’ve analyzed about 8 percent of the data we anticipate collecting over the life of the experiment,” said physicist Thomas Coan, Southern Methodist University, Dallas.

    Coan, a professor in SMU’s Department of Physics, is a principal investigator on NOvA, a collaboration of the U.S. Department of Energy’s Fermi National Laboratory. “So we’re really just at the beginning. But it’s a great start, and it’s gratifying that the beginning has begun so well.”

    More than 200 scientists from the U.S. and six other countries make up the collaboration.

    Specifically, they predict that the experiment’s data will tell them the relative weight of the three different types or “flavors” of neutrinos, as well as reveal whether neutrinos and antineutrinos interact in the same way.

    Answers to those questions will add information to theories of matter’s existence and why it wasn’t annihilated during the Big Bang, Coan said.

    The completed NOvA far detector in Ash River, Minnesota, stands 50 feet tall, 50 feet wide and 200 feet long. The pivoting machine that was used to move each block of the detector into place now serves as the capstone on the end of the completed structure. Photo: Fermilab
    The completed NOvA far detector in Ash River, Minnesota, stands 50 feet tall, 50 feet wide and 200 feet long. The pivoting machine that was used to move each block of the detector into place now serves as the capstone on the end of the completed structure. Photo: Fermilab

    “If we want to understand the universe on a large scale, we have to understand how neutrinos behave,” he said. “Experimental observations from NOvA will be an important input into the overarching theory.”

    Neutrinos flit through ordinary matter almost as if it weren’t there, so it takes a massive detector to capture evidence of their behavior. Coan likens NOvA to a gigantic pixel camera with its honeycomb array of thousands of plastic tubes encasing highly purified mineral oil.

    Neutrinos are not observed directly, so scientists only see the tracks of their rare interactions with atoms. An accelerator at Fermilab in Illinois shoots a neutrino beam, observed first by a near detector there, then by a far detector some 500 miles away in Minnesota.

    The far detector, or “pixel camera,” is 50 feet tall by 50 feet wide and 200 feet long.

    Oscillating neutrinos change from one “type” to another: electron, muon or tau
    As the neutrinos travel they change from one type or “flavor” to another. That “oscillation” confirms the NOvA detector is functioning as designed.

    The first NOvA results were released this week at the American Physical Society’s Division of Particles and Fields conference in Ann Arbor, Mich.

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    A graphic representation of one of the first neutrino interactions captured at the NOvA far detector in northern Minnesota. The dotted red line represents the neutrino beam, generated at Fermilab in Illinois and sent through 500 miles of earth to the far detector. The image on the left is a simplified 3-D view of the detector, the top right view shows the interaction from the top of the detector, and the bottom right view shows the interaction from the side of the detector. Illustration: Fermilab
    A graphic representation of one of the first neutrino interactions captured at the NOvA far detector in northern Minnesota. The dotted red line represents the neutrino beam, generated at Fermilab in Illinois and sent through 500 miles of earth to the far detector. The image on the left is a simplified 3-D view of the detector, the top right view shows the interaction from the top of the detector, and the bottom right view shows the interaction from the side of the detector. Illustration: Fermilab

    The results were culled by scientists who sorted through millions of cosmic ray strikes to zero-in on neutrino interactions.

    “People are ecstatic to see our first observation of neutrino oscillations,” said NOvA co-spokesperson Peter Shanahan, Fermilab. “For all the people who worked over the course of a decade on the designing, building, commissioning, and operating this experiment, it’s beyond gratifying.”

    Researchers have collected data aggressively since February 2014, recording neutrino interactions in the 14,000-ton far detector in Ash River, Minnesota, while construction was still underway. This allowed the collaboration to gather data while testing systems before starting operations with the complete detector in November 2014, shortly after the experiment was completed on time and under budget. NOvA construction and operations are supported by the DOE’s Office of Science.

    The neutrino beam generated at Fermilab passes through the underground near detector, which measures the beam’s neutrino composition before it leaves the Fermilab site.

    The particles then travel more than 500 miles straight through the earth, changing types along the way. About once per second, Fermilab’s accelerator sends trillions of neutrinos to Minnesota, but the elusive neutrinos interact so rarely that only a few will register at the far detector.

    Neutrino-atom interaction releases a signature trail of particles and light
    The beam fires neutrinos every 1.5 seconds, but only for 10 microseconds, Coan said. Including downtime for maintenance, neutrinos are produced two minutes total over the course of a year.

    “We could make the detector out of iron or granite to get more target atoms and have more interactions, but we’d never be able to observe the interactions in iron and granite,” Coan said. “So the detector has to be transparent somehow, a sort of camera. Those two goals are somewhat contradictory. So it takes some cleverness to figure out how to have a massive detector and still see events in it.”

    When a neutrino bumps into an atom in the NOvA detector, it releases a signature trail of particles and light depending on which type it is: an electron, muon or tau neutrino. The beam originating at Fermilab is made almost entirely of one type – muon neutrinos – and scientists can measure how many of those muon neutrinos disappear over their journey and reappear as electron neutrinos.

    If oscillations had not occurred, experimenters predicted they would see 201 muon neutrinos arrive at the NOvA far detector in the data collected; instead, they saw a mere 33, proof that the muon neutrinos were disappearing as they transformed into the two other flavors

    Similarly, if oscillations had not occurred scientists expected to see only one electron neutrino appearance, due to background interactions, but the collaboration saw six such events, which is evidence that some of the missing muon neutrinos had turned into electron neutrinos.

    NOvA observations are nearly equivalent results to those at world’s other neutrino experiments
    Similar long-distance experiments such as T2K in Japan and MINOS at Fermilab have seen these muon neutrino-to-electron neutrino oscillations before. NOvA, which will take data for at least six years, is seeing nearly equivalent results in a shorter time frame, something that bodes well for the experiment’s ambitious goal of measuring neutrino properties that have eluded other experiments so far.

    “One of the reasons we’ve made such excellent progress is because of the impressive Fermilab neutrino beam and accelerator team,” said NOvA co-spokesperson Mark Messier of Indiana University. “Having a beam of that power running so efficiently gives us a real competitive edge and allows us to gather data quickly.”

    Fermilab’s flagship accelerator recently set a high-energy neutrino beam world record when it reached 521 kilowatts, and the laboratory is working on improving the neutrino beam even further for projects such as NOvA and the upcoming Deep Underground Neutrino Experiment. Researchers expect to reach 700 kilowatts early next calendar year, accumulating a slew of neutrino interactions and tripling the amount of data recorded by year’s end.

    Most abundant massive particle in the universe is still poorly understood
    Neutrinos are the most abundant massive particle in the universe, but are still poorly understood. While researchers know that neutrinos come in three types, they don’t know which is the heaviest and which is the lightest. Figuring out this ordering — one of the goals of the NOvA experiment — would be a great litmus test for theories about how the neutrino gets its mass.

    While the famed Higgs boson helps explain how some particles obtain their masses, scientists don’t know yet how the Higgs is connected to neutrinos, if at all.

    The measurement of the neutrino mass hierarchy is also crucial information for neutrino experiments trying to see if the neutrino is its own antiparticle.

    Like T2K, NOvA can also run in antineutrino mode, opening a window to see whether neutrinos and antineutrinos are fundamentally different. An asymmetry early in the universe’s history could have tipped the cosmic balance in favor of matter, making the world we see today possible. Soon, scientists will be able to combine the neutrino results obtained by T2K, MINOS and NOvA, yielding more precise answers about scientists’ most pressing neutrino questions.

    “The rapid success of the NOvA team demonstrates a commitment and talent for taking on complex projects to answer the biggest questions in particle physics,” said Fermilab Director Nigel Lockyer. “We’re glad that the detectors are functioning beautifully and providing quality data that will expand our understanding of the subatomic realm.”

    The NOvA collaboration comprises 210 scientists and engineers from 39 institutions in the United States, Brazil, the Czech Republic, Greece, India, Russia and the United Kingdom. — Fermi National Laboratory, SMU

    NOvA stands for NuMI Off-Axis Electron Neutrino Appearance. NuMI is itself an acronym, standing for Neutrinos from the Main Injector, Fermilab’s flagship accelerator. The Fermilab Accelerator Complex is an Office of Science User Facility.

    For more information, visit the NOvA web site.
    Watch live particle events recorded by the NOvA experiment.
    Learn how the NOvA detector sees neutrinos.
    Follow the experiment on Facebook and Twitter, @novaexperiment.

    Follow SMUResearch.com on Twitter, @smuresearch.

    SMU is a nationally ranked private university in Dallas founded 100 years ago. Today, SMU enrolls nearly 11,000 students who benefit from the academic opportunities and international reach of seven degree-granting schools. For more information see www.smu.edu.

    Fermilab is America’s premier national laboratory for particle physics and accelerator research. A U.S. Department of Energy Office of Science laboratory, Fermilab is located near Chicago, Ill., and operated under contract by the Fermi Research Alliance LLC. Visit Fermilab’s website at www.fnal.gov, and follow Fermilab on Twitter at @Fermilab.

    The DOE Office of Science is the single largest supporter of basic research in the physical sciences in the United States and is working to address some of the most pressing challenges of our time. For more information, please visit science.energy.gov.

    SMU has an uplink facility located on campus for live TV, radio, or online interviews. To speak with an SMU expert or book an SMU guest in the studio, call SMU News & Communications at 214-768-7650.

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    Mustang Minute! Simmons researcher tests if video game motion capture can teach math

    Motion capture software, popular in the world of video gaming, is being tested to see if it may be a useful tool in the classroom.

    Researchers know that the more engaged students are, the more likely they are to learn.

    In her research, SMU teaching expert Candace Walkington, assistant professor of teaching and learning in SMU’s Annette Caldwell Simmons School of Education & Human Development, has measured different kinds of engagement and its effectiveness as a teaching tool.

    Now Walkington has asked students to test motion capture software as a tool for teaching math. The students are enrolled in summer video game design camps at Guildhall, SMU’s premier graduate video game education program.

    Students practiced a motion capture software program that teaches geometry. The program was created by Walkington in partnership with Extreme Reality, an industry leader in motion capture software. Results of the preliminary testing will be included in a grant proposal Walkington is preparing to test the software further.

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    For the preliminary test, Walkington asked students to read problems on a computer and then move their arms to either signal their answers or advance the math questions to the next sequence.

    The study is one of several for Walkington, whose previous studies have focused on how abstract mathematical concepts can be grounded in students’ out-of-school interests, experiences and everyday reasoning practices.

    Another of Walkington’s recent studies, published in the Journal of Educational Psychology, draws data from Pennsylvania classrooms using an in-school intelligent tutoring system for Algebra I. The software personalizes instruction to match the pace of each student, detects a student’s current state of knowledge, determines which kinds of problems to present and what feedback and help are needed, and tracks each child’s progress. Walkington has a long-time collaboration with Carnegie Mellon University’s Pittsburgh Science of Learning Center.

    She has also been awarded a grant as part of the Spencer Postdoctoral Fellowship Program of the National Academy of Education. The $55,000 grant supports early career scholars working in critical areas of education research.

    Walkington earned B.S. and M.S. degrees in mathematics from Texas A&M University, and had planned to have a career as a financial mathematician. She changed her career path after completing a National Science Foundation graduate teaching fellowship at a high-poverty rural school in Iola, Texas.

    There Walkington discovered firsthand the satisfaction of designing innovative strategies to help struggling fifth and sixth graders learn math. The experience brought back memories of her own seventh-grade struggle with algebra, which had threatened to derail her interest in math.

    Walkington has also participated in the Measures of Effective Teaching Project, funded by the Bill & Melinda Gates Foundation.

    While working on her Ph.D. at the University of Texas at Austin, Walkington collaborated on research geared toward identifying what teacher behaviors are a strong predictor of student success on standardized math tests. The research was incorporated into the Gates Foundation’s Measures of Effective Teaching Project, one of the largest research efforts in U.S. history to identify and understand effective teaching. The project is shaping educational policy nationally.

    Walkington and research colleague Michael P. Marder, executive director of UTeach Science Program, University of Texas at Austin, contributed protocols to the MET Project based on their findings, including one finding that classrooms where the teacher focuses specifically on students deeply understanding math have higher test scores compared to classrooms where teachers focus on drill and standardized test preparation. In addition, they also found that classroom management was a necessary, but not sufficient, condition for learning.

    Walkington’s research appears in a new groundbreaking book about the MET Project, “Designing Teacher Evaluation Systems: New Guidance from the Measures of Effective Teaching Project,” (Wiley, July 2014). Walkington, who led a team that analyzed 1,000 video math lessons of teachers around the country to code effective teaching, is first author on a chapter. — Margaret Allen

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    SMU is a nationally ranked private university in Dallas founded 100 years ago. Today, SMU enrolls nearly 11,000 students who benefit from the academic opportunities and international reach of seven degree-granting schools. For more information see www.smu.edu.

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    $3.78 million awarded by Department of Defense to SMU STEM project for minority students

    African Americans make up 11% of U.S. workforce but only 6% of STEM workers; 83% of SMU STEM students pursue grad school

    Dallas eighth-graderTomisin Ogunfunmi measure sodium bicarbonate for a lab simulating air bag inflation.
    Dallas eighth-graderTomisin Ogunfunmi measure sodium bicarbonate for a lab simulating air bag inflation.

    The U.S. Department of Defense has awarded the STEMPREP Project at Southern Methodist University a $3.78 million grant to support its goal of increasing the number of minorities in STEM fields.

    The grant follows a $2.6 million grant in 2014.

    According to a report just released from the Executive Office of the President, 21 percent of Hispanic men and 28 percent of black men have a college degree by their late twenties compared to nearly half of white men. The 2013 U.S. Census Bureau reports that African Americans make up 11 percent of the U.S. workforce but only 6 percent of STEM workers. Hispanics make up 15 percent of the U.S. workforce, but just 7 percent of the STEM workforce.

    To create more diversity in STEM fields, the STEMPREP Project, based at the Annette Caldwell Simmons School of Education and Human Development at SMU, recruits bright, science-minded middle school students for the first phase of the 10-year program.

    One hundred seventh and eighth grade minority students live on the SMU campus through August 1 for six weeks of college-level biology, chemistry, statistics and research writing and presentation classes, laboratory techniques course, and the creation of a final in-depth research presentation on a disease. Each day begins with class at 8:30 a.m and wraps up after study hall at 8:30 p.m.

    Eighth-grader Walter Victor Rouse, II wants to be a heart surgeon and professional basketball player to honor his grandfather, Loyola basketball standout Vic Rouse, who died from heart disease before Walter was born. Vic Rouse was an honor student at Loyola University in 1963 when his rebound and basket in overtime clinched the NCAA basketball championship for Loyola. Rouse died in 1999 at age 56.

    STEMPREP identifies talent early and nurtures it with practice and coaching
    As a STEMPREP student, Walter is part of a program that boasts an impressive success rate – 100 percent of STEMPREP project students who finish the program attend college and 83 percent go on to graduate school to become physicians, pharmacists, dentists, researchers or engineers.

    “Being in this program empowers students,” says Charles Knibb, STEMPREP director of academic affairs, an SMU research professor and a former surgeon.

    Moses Williams, executive director, founded the program in 1990 when he was director of admissions for Temple University School of Medicine in Philadelphia.

    “As a gatekeeper, I realized there were not a lot of minorities being considered,” he says. “I wanted to change that.” He compares the program to training young athletes: Identify talent early and then nurture it through practice and coaching.

    Eighth-grader Beatriz Coronado of Marietta, Georgia, says she would be spending the summer taking care of her little brothers if she wasn’t at SMU as part of STEMPREP. Instead she recently completed her favorite lab so far, an enzyme-linked immuno assay simulation that detects and measures antibodies in the blood. She plans to become a family physician.

    Charles Knibb, SMU, Simmons

    Dallas eighth-grader Tomisin Ogunfunmi says he didn’t know he could be so independent until he spent six weeks on the SMU campus at STEMPREP last summer. Now he looks forward to next summer when he will work in a Philadelphia university research lab with a scientist as a mentor. He plans to pursue a combination MD/PhD to become a biomedical engineering researcher, possibly at a university.

    After participants in the STEMPREP program finish the junior high component, they spend their senior high and college summers working in university, U.S. government and private research laboratories in Philadelphia, Bethesda, Seattle, Toronto and Vancouver.

    Taisha Husbands, who graduated from SMU in May with psychology and chemistry degrees, joined the STEMPREP program as an eighth grader.

    “I’ve known since I was four that I wanted to be a doctor,” says Husbands, a native of St. Thomas, Virgin Islands. “But I come from a family of teachers and police officers; I thought this program would help me reach my goal.”

    Husbands starts medical school in August at the University of Southern California. In the meantime, this summer she is teaching science to current STEMPREP seventh and eighth graders and lives with them in a residence hall on campus. She hasn’t forgotten what it is like to be an eighth grader wrestling with college-level material and created an evening study session for students who wanted extra help.

    “When I was in eighth grade, one of the STEMPREP teachers sat down with me at lunch every day to help me with the material,” she says. “Helping these students is one of those pay-it-forward things.”

    Follow SMUResearch.com on twitter at @smuresearch.

    SMU is a nationally ranked private university in Dallas founded 100 years ago. Today, SMU enrolls nearly 11,000 students who benefit from the academic opportunities and international reach of seven degree-granting schools. For more information see www.smu.edu.

    SMU has an uplink facility located on campus for live TV, radio, or online interviews. To speak with an SMU expert or book an SMU guest in the studio, call SMU News & Communications at 214-768-7650.

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    NBC, CBS & CW33: Jurassic Jackpot — 5-Year-Old Finds Dinosaur in Mansfield

    The folks at SMU say a find like this is extremely rare, and for a five-year-old kid to have found it, may be more rare than the Dino itself.

    The fossil bones of a 100 million-year-old dinosaur discovered at a shopping center construction site will be studied and identified by paleontologists at Southern Methodist University’s Shuler Museum of Paleontology.

    The bones were discovered by a Dallas Zoo employee and his young son. The fossils have been transported to SMU’s Shuler research museum in the Roy M. Huffington Department of Earth Sciences.

    The discovery of the bones, believed to be from the family of armored dinosaurs called nodasuaridae, was covered by local TV stations NBC Channel 5, CBS Channel 11 and Channel CW 33.

    Dale Winkler, SMU, paleontologist, dinosaur
    mike-polcyn, SMU, paleontology, Huffington

    The story aired April 7, 2015.

    Watch the CW 33 story.

    EXCERPT:

    By NewsFix
    Channel CW 33

    Dinosaurs come in all shapes and sizes. Well, it also turns out so do Dino-diggers.

    “Over the past few years, we’ve found a lot of really amazing things, but this is by far the most awesome thing we’ve found.”

    Yeah, Dallas zoo keeper Tim Brys and his son Wiley hit the Jurassic jackpot while digging around a Mansfield shopping center development.

    Wiley, who is just five-years-old, found something 100 million years in the making.

    “He walked up here a head of me here and came back with a piece of bone. It was a pretty good size. I knew it was something interesting,” Brys said.

    That interesting thing is what SMU paleontologists call a Nodosaur, a dinosaur probably as large as a horse, covered in armored plates.

    Now this guy is headed to SMU to be examined.

    “I don’t think it has hit either one of us just how amazing this is. I know it’s a once in a lifetime opportunity a lot of people never find something like this.” Brys said.

    Watch the CW 33 story.

    Follow SMUResearch.com on twitter at @smuresearch.

    SMU is a nationally ranked private university in Dallas founded 100 years ago. Today, SMU enrolls nearly 11,000 students who benefit from the academic opportunities and international reach of seven degree-granting schools. For more information see www.smu.edu.

    SMU has an uplink facility located on campus for live TV, radio, or online interviews. To speak with an SMU expert or book an SMU guest in the studio, call SMU News & Communications at 214-768-7650.

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    The Huffington Post: 4-Year-Old Boy Finds Rare 100-Million-Year-Old Dinosaur Bones In Texas

    The SMU scientists started excavating the dinosaur bones on Friday. They speculate the bones belong to a group of dinosaurs called Nodosaurs — herbivorous creatures that lived in the late Jurassic to early Cretaceous periods.

    The fossil bones of a 100 million-year-old dinosaur discovered at a shopping center construction site will be studied and identified by paleontologists at Southern Methodist University’s Shuler Museum of Paleontology.

    The bones were discovered by a Dallas Zoo employee and his young son. The fossils have been transported to SMU’s Shuler research museum in the Roy M. Huffington Department of Earth Sciences.

    The discovery of the bones, believed to be from the family of armored dinosaurs called nodasuaridae, was covered by journalist Dominique Mosbergen, reporting for The Huffington Post.

    The story was published April 8, 2015.

    Read the full story.

    EXCERPT:

    By Dominique Mosbergen
    The Huffington Post

    A 4-year-old and his dad were looking for fossils in Mansfield, Texas, when the boy made an incredible discovery. There, buried in the dirt, the child reportedly found rare, 100-million-year-old dinosaur bones.

    Last September, Tim Brys, a keeper at the Dallas Zoo, brought his son, Wiley, to the site of a future shopping center to conduct a fossil hunt, NBC News reported. The earth had been dug up to make way for the development, and Brys said he had hoped to find some fish fossils buried there.

    “We commonly go collect fossils as something we can do together to be outside. Wiley enjoys coming with me on my trips,” Brys told the news outlet.

    That day, the father and son reportedly did find some fish vertebrae at the site. But Wiley went on to make a far more astonishing discovery.

    [Wiley] walked up ahead of me and found a piece of bone,” Brys told the Dallas Morning News. “It was a pretty good size and I knew I had something interesting.”

    He was right.

    According to scientists at Southern Methodist University, Wiley had stumbled upon some rare dinosaur bones, estimated to date back 100 million years.

    Read the full story.

    Follow SMUResearch.com on twitter at @smuresearch.

    SMU is a nationally ranked private university in Dallas founded 100 years ago. Today, SMU enrolls nearly 11,000 students who benefit from the academic opportunities and international reach of seven degree-granting schools. For more information see www.smu.edu.

    SMU has an uplink facility located on campus for live TV, radio, or online interviews. To speak with an SMU expert or book an SMU guest in the studio, call SMU News & Communications at 214-768-7650.

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    CBS DFW 11: Too Much ‘Blue Light’ Hinders Sleep

    The negative consequences of blue light are associated with people’s metabolic clock being offset from their brain clock.

    CBS DFW Channel 11 reporter Doug Dunbar covered the blue light research of Brian Zoltowski, an assistant professor in the SMU Department of Chemistry.

    “As a society, we are using more technology, and there’s increasing evidence that artificial light has had a negative consequence on our health,” says Zoltowski, who was awarded $320,500 from the National Institute of General Medical Sciences of the National Institutes of Health to continue its research on the impact of blue light.

    “Our study uses physical techniques and chemical approaches to probe an inherently biological problem,” Zoltowski said. “We want to understand the chemical basis for how organisms use light as an environmental cue to regulate growth and development.”

    Dunbar’s piece featuring Zoltowski’s research and lab, “Too Much “Blue Light” Hinders Sleep,” was published online Dec. 12.

    Watch the full coverage.

    EXCERPT:

    By Doug Dunbar
    CBS DFW 11

    Can’t get a good night’s sleep. You might be getting a little too much blue light.

    What’s that? It’s a big issue the Federal government is asking researchers at SMU to study.

    There’s a reason why it’s dark in this lab. It’s because they’re studying light.

    They have the lights off so they can purify the proteins in the dark.

    So that we can study the activation process when we first expose them to light. But not just any light. Blue light. The stuff in fluorescents, and devices like laptops and phones. But also daylight.

    One of the negative consequences of blue light is associated with our metabolic clock being offset from our brain clock. That can lead to problems for diabetes, cancer, mood disorders.

    [ …] But Zoltowski and his crew could potentially tackle problems much bigger than sleeping.

    “If we understand how these proteins that respond to light work we can create new biotechnology.”

    Maybe new ways to deliver drugs, or even targeted cancer treatments.

    “We can shine light on a very specific spot and that can allow us to activate any biological event we want at that very precise location and time.”

    Watch the full coverage.

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    Fossil supervolcano in Italian Alps may answer deep mysteries around active supervolcanoes

    Scientists will study unique exposure of “plumbing,” which can reveal critical understanding of how today’s volcanoes erupt

    There’s nothing subtle about the story told by the rocks in northern Italy’s Sesia Valley. Evidence of ancient volcanic activity is all around, says geologist and volcanologist James Quick, Southern Methodist University, Dallas.

    But the full story is much less obvious, Quick notes.

    Quick led an international team that in 2009 announced they had discovered a 282-million-year-old fossil supervolcano in Sesia Valley. The find was the result of nearly two decades of geological research in the valley and its surrounding mountains.

    The discovery has attracted scientific attention worldwide for its unprecedented view of a supervolcano’s internal plumbing to a depth of 15.5 miles.

    But that’s not the end of the story — rather the beginning, says Quick, a professor in SMU’s Roy M. Huffington Department of Earth Sciences in Dedman College of Humanities and Sciences.

    The supervolcano holds clues — and ultimately answers — to critical scientific questions about the processes by which volcanoes erupt.

    “I am certain that continued study of this unique geologic exposure will reveal significant insight into the operation of active supervolcanoes,” he says.

    There are six active supervolcanoes in the world, including Yellowstone, Long Valley and Valles in the United States.

    Volcanic plumbing, normally hidden from examination deep within the earth, is the internal geological structure through which lava migrates from the earth’s mantle, up through the crust, to ultimately explode. Volcanic plumbing and the processes within it remain matters of speculation, as volcanologists explore how lava forms and traverses through the earth.

    News of a supervolcano initially sparked alarm
    Supervolcanoes are one of the most potentially violent events in the world.

    Sesia Valley's fossil supervolcano could answer the question, "How does magma build up in the crust in the run up to a super eruption?” The fossil supervolcano was discovered by a team led by volcanologist James Quick, a professor of geology at Southern Methodist University. (Photo: SMU)
    Sesia Valley’s fossil supervolcano could answer the question, “How does magma build up in the crust in the run up to a super eruption?” The fossil supervolcano was discovered by a team led by volcanologist James Quick, a professor of geology at Southern Methodist University. (Photo: SMU)

    They erupt hundreds of cubic miles of lava and ash, and have caused catastrophic changes in global climate.

    Sesia Valley’s supervolcano last erupted 282 million years ago, when it erupted more than 186 cubic miles of molten rock, ash and gas.

    The discovery by Quick and scientists from the University of Trieste made headlines worldwide in 2009. Sesia Valley residents were alarmed.

    “They held a big town meeting in the largest of the communities, Borgosesia, and more than 500 people came from all over the valley,” Quick says. “People were extremely worried the volcano would erupt again.”

    The scientists reassured residents they had nothing to fear. A fossil, the supervolcano no longer poses a danger.

    Supervolcano is a super attraction for its scientifically unique features
    Now its rocks are a popular destination for scientists, college students, villagers, tourists and school groups. Proud residents enthusiastically brand many of the valley’s events and activities with their supervolcano identity.

    Even acclaimed Italian winemaker Cantalupo in 2013 honored the unique volcanic origins of its Sesia Valley grapes by labeling its Christmas wine with a painting of the exploding supervolcano.

    The supervolcano also is a central feature of the new Sesia-Val Grande Geopark, recently designated by the U.N.’s UNESCO agency.

    Residents of the Piedmont region’s Sesia Valley, with diverse history and cultures, joined forces after the discovery was announced to pursue the coveted UNESCO geopark status. One of only 100 geoparks in the world, Sesia-Val Grande Geopark spans tens of thousands of acres and more than 80 Alpine communities.

    Chaotic riverbed blocks are key to solving volcanic rock puzzle
    Rock strata of the Sesia Valley supervolcano are exposed along the banks of the Sesia River for 22 miles, sitting sideways like a tipped-over layer cake. In some places, the rocks protrude haphazardly from the sides of mountains; in other places they are obscured beneath dense forest, roads, bustling villages, fields and pastures, outdoor sports locales and tourist destinations.

    Some of the supervolcano’s deepest sections serve as a backdrop for Varallo, one of many communities in the Alpine valley.

    Granite boulders littering the bed of the Sesia River were formed in the supervolcano’s magma chamber.

    Atop a hill overlooking Varallo, more than 40 chapels of the 15th century world-famous monumental religious complex Sacro Monte di Varallo were built on the furnace that powered the volcanic system.

    So how did an entire valley not see an ancient fossil supervolcano until now?
    Like an ant looking at an elephant, it’s difficult to see something so gigantic for what it really is. In the United States, for example, it’s only in about the last 30 years that geologists deciphered that Yellowstone is a supervolcano.

    Scientists have known for more than a century, however, about the presence of volcanic rocks in Sesia Valley.

    That’s what drew Quick to the area in 1989. He sought insight into the processes in the deep crust that influence eruptions. What Quick found kept him coming back every summer for 16 years, including as head of the Volcano Hazards Program for the U.S. Geological Survey.

    Quick’s quest made him the first scientist in more than 50 years — building on the work of Italian geologist Mario Bertolani before World War II — to methodically tramp every mile of the steep mountainsides, sometimes with colleagues, often alone, to extensively identify and map the valley’s rocks.

    Years of intrepid geological work yield a supervolcano hiding in plain sight
    Quick endured pounding rain, fierce lightning, poisonous snakes, mosquitos, treacherous topography, slippery waterfalls and unexpected sheer drop-offs. More than once he feared for his life.

    “Working in the mountains there I was frequently terrified,” Quick said recently, during one of his frequent treks to the valley. “I’d wonder, is this the next traverse that claims my life? I had many frightening experiences. The vegetation looks thick, but underneath the canopy it’s easy to walk, except there are lots of cliffs hidden by the trees. Another problem — locating your position; because you can’t look out and see the topography. We started this before GPS, doing it old school, by triangulation, reading the map, carefully locating where we were, and using altimeters.”

    Summer 2005 brought an unexpected breakthrough.

    Quick was invited by his Italian colleague to see some puzzling rocks in the riverbed of the Sesia River in hopes he could identify them. Upon seeing the chaotic assemblage, Quick recognized the rocks were gigantic blocks torn from the rim of the volcano and mixed with volcanic ash during the eruption — an assemblage geologists call a megabreccia.

    In 2009, following additional work to confirm the discovery, Quick and his team announced their discovery in the scientific journal “Geology.” They estimated the mouth of the volcano when it was active would have been at least eight miles in diameter, although its true size will never be known because much of it is covered by younger sedimentary deposits of the Po Plain.

    Fossil supervolcano sits against ancient boundary separating Africa, Europe
    In its youth, Sesia Valley’s supervolcano was inland on the supercontinent of Pangea. When Pangea began to break up into smaller continents more than 200 million years ago, the supervolcano was stranded on the coast of what we now call Africa.

    About 20 million years ago, another tectonic shift sent Africa colliding into southern Europe. The coastal edges of both continents were heaved upward, creating a massive uplift – the Alps.

    The Sesia Valley supervolcano, in the process, was tilted sideways and shoved upward, exposing its plumbing.

    Today the supervolcano is a mecca for geologists not only for its volcanic story, but as one of the best samples of the earth’s mantle exposed at the surface.

    Calling it the “Rosetta Stone” of supervolcanoes, Quick says the Sesia Valley fossil supervolcano ultimately could solve the mystery, “How does magma build up in the crust in the run up to a supereruption?”

    Quick honored for scientific achievements
    In 2010 the Italian Geological Society awarded Quick the Capellini Medal, presented to foreign geoscientists for a significant contribution to Italian geology.

    In 2013, Quick was named a Fellow of the American Association for the Advancement of Science. Along with his Italian colleague, Silvano Sinigoi, Quick also was awarded honorary citizenship of Borgosesia, the highest award given to civilians by the largest city in the Sesia Valley.

    “The discoveries in the Sesia Valley demonstrate the value of supporting basic research,” says Quick, who came to SMU in 2007 after a 25-year scientific career with USGS. Quick serves also as associate vice president for research and dean of graduate studies at SMU.

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    FOX 4 DFW: SMU’s supercomputer aids in search for particles present during Big Bang

    International team of physicists study elusive fundamental particles present at origins of universe, and which still bombard us today.

    SMU physicist Thomas E. Coan talked with Fox 4 DFW reporter Dan Godwin about the neutrino, an elusive fundamental particle that scientists are working to understand using one of the most powerful physics experiments in the world.

    Godwin hosted Coan on the program Fox4Ward on Nov. 30, 2014. Coan and Godwin discussed neutrinos, one of the most elusive particles in the Standard Model’s “particle zoo.”

    Neutrinos are the subject of the NOvA experiment, with the goal to better understand the origins of matter and the inner workings of the universe.

    One of the largest and most powerful neutrino experiments in the world, NOvA is funded by the National Science Foundation and the U.S. Department of Energy.

    At the heart of NOvA are its two particle detectors — gigantic machines of plastic and electronic arrays.

    Morrison Formation, Jurassic, climate, ancient soil, Myers, paleosols
    Meuret, Ritz, asthma, CART, slow breathing

    One detector is at the U.S. Department of Energy’s Fermi National Accelerator Laboratory near Chicago and the other is at Ash River, Minn. near the Canadian border.

    Critical to crunching data from the experiment is a network of supercomputers, including the SMU ManeFrame, one of the most powerful academic supercomputers in the nation.

    Designed and engineered by about a hundred U.S. and international scientists, NOvA is managed by Fermilab. NOvA’s detectors and its particle accelerator officially started up at the end of October 2014.

    Coan, an associate professor in the SMU Department of Physics, is a member of the NOvA experiment. He is co-convener of NOvA’s calibration and alignment group, guiding a crew of international scientists who handle responsibility for understanding the response of NOvA’s detector when neutrinos pass through and strike it.

    Neutrinos are invisible fundamental particles that are so abundant they constantly bombard us and pass through us at a rate of more than 100,000 billion particles a second. Because they rarely interact with matter, they have eluded scientific observation.

    Watch the Fox 4Ward interview, SMU Physics Experiments.

    EXCERPT:

    By Dan Godwin
    Fox 4Ward Host

    When you talk about the origin of the universe, the Big Bang is widely accepted theory. But it never hurts to have additional evidence. And that’s where an SMU super computer comes in. In this FOX 4Ward, Dan Godwin finds out why the smallest particles in the universe are getting lots of scrutiny.

    Watch the Fox 4Ward interview, SMU Physics Experiments.

    Follow SMUResearch.com on twitter at @smuresearch.

    SMU is a nationally ranked private university in Dallas founded 100 years ago. Today, SMU enrolls nearly 11,000 students who benefit from the academic opportunities and international reach of seven degree-granting schools. For more information see www.smu.edu.

    SMU has an uplink facility located on campus for live TV, radio, or online interviews. To speak with an SMU expert or book an SMU guest in the studio, call SMU News & Communications at 214-768-7650.

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    Asthma patients reduce symptoms, improve lung function with shallow breaths, more CO2

    New study finds taking deep breaths doesn’t work; sufferers pairing biofeedback with shallow breaths increased carbon dioxide and improved long-term lung health

    Asthma patients taught to habitually resist the urge to take deep breaths when experiencing symptoms were rewarded with fewer symptoms and healthier lung function, according to a new study from Southern Methodist University, Dallas.

    The findings are from a large clinical trial funded with a grant from the National Institutes of Health’s National Heart, Lung, and Blood Institute.

    The results suggest asthma patients using behavioral therapy in conjunction with their daily asthma medicine can improve their lung health over the long-term, said principal investigators Thomas Ritz and Alicia E. Meuret, both SMU clinical psychologists.

    Also, sufferers may potentially reduce their dependence on emergency medication, such as rescue inhalers, the researchers said.

    SMU behavioral psychologist Dr. Alicia Meuret helps a patient learn shallow breathing with biofeedback to relieve symptoms of air hunger. (Photo: SMU)
    SMU clinical psychologist Dr. Alicia Meuret helps a patient learn shallow breathing with biofeedback to relieve symptoms of air hunger. (Photo: SMU)

    Asthma can be a life-threatening disease if not managed properly, according to the American Lung Association. Nearly 26 million Americans have asthma, says ALA.

    One of the most common chronic disorders in childhood, asthma is the third leading cause of hospitalization among children under 15, ALA says.

    Asthma attacks typically provoke sufferers to gulp air and take deep breaths to relieve the frightening fear of asphyxiation, said Ritz and Meuret. In addition, asthma sufferers tend to breathe too much even when not experiencing symptoms.

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    But Ritz, Meuret and their co-authors found with their research that deep breathing is exactly the wrong thing to do.

    For their study, one group of asthma patients used biofeedback to monitor their breathing for reassurance they were getting sufficient oxygen. The patients practiced shallower, shorter breaths to increase their intake of carbon dioxide, CO2. A second group also practiced slower breathing, but without biofeedback.

    “This study goes to the heart of hyperventilation — which is deep, rapid breathing that causes a drop in CO2 gas in the blood. That makes a person feel dizzy and short of breath,” Ritz said. “Patients in our study increased CO2 and reduced their symptoms. And over a six-month period we saw in the biofeedback group an actual improvement in the physiology of their lungs.”

    The researchers reported their findings in the pulmonology medical journal Chest, “Controlling asthma by training of capnometry-assisted hypoventilation vs. slow breathing.” Ritz is a professor and Mueret an associate professor in the Department of Psychology in SMU’s Dedman College.

    Shallow breathing method is counterintuitive
    “When people hyperventilate, there is something very strange happening,” Meuret said. “In essence they are taking in too much air. But the sensation that they get is shortness of breath, choking, air hunger, as if they’re not getting enough air. It’s almost like a biological system error.”

    Onlookers commonly give the advice, “Take a deep breath.” But that’s just the opposite of what a struggling breather should do.

    “They don’t need any more oxygen,” Meuret said. “But consciously or not, people start to take deeper breaths — and that makes the symptoms worse.”

    Among the study’s 120 patients who used the brief, four-week biofeedback therapy to boost their CO2, the researchers found that of 21 clinical indices of pathology more than 80 percent resulted in significant reductions. The researchers saw improvement in asthma symptoms and control, better lung function, reduced oversensitivity of the airways and less use of reliever medication, as well as improvement in physiology and the pathology of the airways.

    Biofeedback method tested against tough scientific control group
    The biological-behavioral treatment method, called Capnometry-Assisted Breathing Training, or CART for short, was developed by Meuret. Previous randomized controlled studies by Meuret found CART reduced symptoms of panic and hyperventilation in patients with panic and anxiety.

    The handheld capnometer, equipped with a digital readout, enables patients via biofeedback to track changes in their CO2 when they alter their breathing during breathing training exercises and instruction sessions. Capnometers are medical devices that can only be purchased by a health care provider.

    For the current SMU study, CART patients were compared to a randomized control group that also received a breathing treatment — specifically, slower breathing, or SLOW for short.

    Patients in the SLOW group used the CART device also for their home exercises to validate they were breathing slower. The only difference between the CART and SLOW groups was that CART patients received biofeedback about their CO2.

    “We tested CART against the toughest scientific control we could devise — another breathing treatment, where patients receive the same amount of attention from their therapist, use equipment to help them alter their breathing, are primed to pay attention to their own asthma management, and receive encouragement to take their medicine more regularly,” Ritz said.

    CART and SLOW patients both improved, but CART benefits were long-lasting
    Patients in the study were from the Dallas-Fort Worth area, all of them medically diagnosed with asthma. Each patient’s asthma diagnosis was independently validated at Baylor University Medical Center at Dallas by a methacholine airways stress test, a stringent diagnostic procedure to confirm patients met the criteria for asthma.

    After four weeks of CART and SLOW training, asthma symptoms for both groups had improved, even when controlling for any change in medication intake.

    However at follow up six months later, asthma symptoms for the SLOW control group had returned to higher levels.

    “The follow-up period is often viewed as the moment of truth of how effective a treatment is,” said Meuret. “Once a patient doesn’t have to come to treatment, does the treatment continue to be beneficial? After four weeks, both treatments were beneficial, but CART was superior — and showed even greater improvements beyond that.”

    CART patients also became less distressed about the methacholine test, indicating higher distress tolerance to their symptoms, Ritz said.

    In addition, during treatment, the airways of CART patients widened during treatment in the lab, according to measurements taken by a forced oscillation technique. That was a positive development that allowed patients to breathe easier. Airways in the SLOW group actually narrowed a bit, said Ritz. Nevertheless, SLOW resulted in significant improvement also.

    “The long-term goal of the CART research is to test whether we can achieve the same improvements with occasional intervals of capnometer feedback training, or ideally test whether shallow breathing in itself will achieve the same stable increases in CO2,” said the researchers.

    CART not a relaxation technique
    CART is not relaxation training. Quite the opposite.

    “It’s actually very, very, very unrelaxing when patients start,” Meuret said.

    For patients with low CO2 in particular, the process of breathing slow and shallow to increase the CO2 level — even just slightly — tends to trigger extreme air hunger.

    “Only by reassuring themselves that the symptoms are caused by low CO2 and not low oxygen, they can keep on going,” Meuret said. “And that’s even more difficult for asthmatics than anxious patients who have a normal lung function.”

    Patients initially want to take a deep breath, she said. “But I reassure them not to, telling them to ‘Look at the CART device, look at their oxygen, it’s at 100 percent, it can’t get any higher.’”

    CART therapy can improve quality of life, reduce health dangers
    “The goal is to reduce the need of the emergency medication,” Ritz said. “It’s a quality of life issue.”

    Patients with asthma symptoms miss out on sports, limit their physical activity, or are kept out of school P.E. and other activities. They can also become depressed and anxious, and get over-sensitive to sensations.

    “The more you can reduce these symptoms the more the person can take part in daily life like a normal person,” Ritz said.

    Physiologically, symptoms are also an indicator the asthma patient may have more inflammation and constriction.

    While there’s always the risk an attack may be fatal, Ritz said, lesser outcomes are serious also. It’s recommended to intervene in asthma early, ideally during childhood, because the airways become reshaped.

    “The longer they’re inflamed, the thicker the tissue of the airways get and the narrower the airways and the less they can relax,” he said.

    Other co-authors on the study were SMU psychologist David Rosenfield, graduate student Ashton M. Steele, and physician Mark W. Millard, Baylor University Medical Center Dallas. — Margaret Allen

    Follow SMUResearch.com on twitter at @smuresearch.

    SMU is a nationally ranked private university in Dallas founded 100 years ago. Today, SMU enrolls nearly 11,000 students who benefit from the academic opportunities and international reach of seven degree-granting schools. For more information see www.smu.edu.

    SMU has an uplink facility located on campus for live TV, radio, or online interviews. To speak with an SMU expert or book an SMU guest in the studio, call SMU News & Communications at 214-768-7650.

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    Earth & Climate Energy & Matter Videos

    Hunt for dark matter takes physicists deep below earth’s surface, where WIMPS can’t hide

    The next-generation of the Super Cryogenic Dark Matter Search, called SuperCDMS, is slated for construction at SNOLAB, an underground laboratory in Ontario, Canada

    SuperCDMS, SNOLAB, dark matter

    Dark matter makes up much of the universe, and surrounds us all like an invisible soup. Physicists have hunted dark matter particles for decades, but they continue to elude observation.

    Now a major international experiment aimed at discovering dark matter could be constructed and operational by 2018, according to the consortium of scientists on the experiment known by its acronym, SuperCDMS SNOLAB.

    With SuperCDMS SNOLAB, physicists will go deeper below the surface of the earth than earlier generations of the experiment. Deep underground, scientists use the earth as a shield to block out particles that resemble dark matter, making it easier to see the real thing.

    Physicists have begun research and design and are building prototypes for the next-generation SuperCDMS, known by its full name as the Super Cryogenic Dark Matter Search. It will be located at SNOLAB, an existing underground science laboratory in Ontario, Canada, said physicist Jodi Cooley, a SuperCDMS scientist.

    As an experimental particle physicist, Cooley heads the dark matter project team at Southern Methodist University, Dallas, and is a designated principal investigator, or lead scientist, on the SuperCDMS experiments.

    Research and design of SuperCDMS SNOLAB is slated to continue through 2015, with fabrication in 2016 and 2017. The experiment could be ready for operational testing by 2018, Cooley said.

    DOE and NSF announce support for SuperCDMS SNOLAB
    The U.S. Department of Energy and the National Science Foundation recently announced they will fund SuperCDMS SNOLAB — as well as two other unrelated dark matter experiments — as part of a committed U.S. scientific focus on furthering investigation into elusive dark matter. The agencies previously funded the predecessors to SuperCDMS SNOLAB, known as SuperCDMS Soudan and CDMS.

    “This is a very exciting time in our field, and I think the United States is well-positioned to play a key role,” said Cooley, an associate professor in SMU’s Department of Physics. “The three experiments chosen, SuperCDMS, LZ and AMDX, are complementary and together provide sensitivity to a large variety of potential dark matter candidates. In particular, SuperCDMS provides unprecedented sensitivity to light dark-matter candidates.”

    SuperCDMS SNOLAB is a collaboration of physicists from 21 institutions in the United States, Canada and Europe.

    Dark matter — the next unsolved mystery, and a key to the Universe
    There has long been evidence that dark matter exists and is a large part of the matter that makes up the Universe. A handful of experiments around the globe, including SuperCDMS Soudan and CDMS II, use different methods to focus on the hunt for dark matter.

    The design of SuperCDMS SNOLAB, which is among the world’s leading dark matter projects, enables it to look for WIMPS, short for weakly interacting massive particles.

    WIMPS are a generic class of dark matter, with an unknown mass that could be either “light” or “heavy.” SuperCDMS has unprecedented sensitivity to the light mass, sometimes called low mass, WIMPS. The LZ experiment will have unprecedented sensitivity to heavy mass, or high mass, WIMPS. AMDX looks for a different type of dark matter called an axion.

    CDMS and SuperCDMS Soudan also focus on lower mass dark matter.

    Deep below the ground, to block out distractions
    SuperCDMS SNOLAB will be constructed 6,800 feet underground — much deeper than CDMS or SuperCDMS Soudan, which are 2,341 feet below the earth in an abandoned underground iron mine near Soudan, Minn. Depth decreases what Cooley refers to as the “background noise” of other particles that can mimic dark matter or cloud an observation.

    DOE and NSF announced they would fund dark matter experiments in the wake of recommendations in May from their Particle Physics Project Prioritization Panel, a task force of the DOE and NSF made up of U.S. physicists.

    In its report, the panel didn’t specify any particular dark matter experiments for funding, but broadly concluded that investment in the search for dark matter is key for the United States to maintain its status as a global leader in addressing the most pressing scientific questions.

    Total projected cost for SuperCDMS SNOLAB is about $30 million.

    SuperCDMS: How it works
    The heart of SuperCDMS is an array of 42 detectors the size of hockey pucks, stacked atop one another in a copper canister encased in a large cooling tower. Their purpose is to capture any evidence of dark matter with their silicon and germanium surfaces, which are cooled to near absolute zero to measure single particle interactions.

    SuperCDMS SNOLAB is a ramped-up version of its predecessors, with 10 times the sensitivity to detect a full range of WIMPS, from 1 to 1,000 gigaelectronvolts.

    SMU’s SuperCDMS project team is participating in the design and development of the shielding at SuperCDMS SNOLAB and the selection of radio-pure materials that will be used in the construction of the experiment. The shielding’s purpose is to shield the detectors from background particles — the interaction signatures of neutrons — that can mimic the behavior of WIMPS. Jodi Cooley explains the SMU team’s search for ultra-pure construction materials for the detectors.

    SMU’s dark matter research is funded through a $1 million Early Career Development Award that Cooley was awarded in 2012 from the National Science Foundation.

    Fermi National Accelerator Laboratory (Fermilab) and SLAC National Laboratory are the lead laboratories on SuperCDMS Soudan and contribute scientific staff, project management, and engineering and design staff.

    Besides SMU and Fermilab, institutions with scientists on SuperCDMS include the California Institute of Technology, Massachusetts Institute of Technology, Queen’s University, Texas A&M University, University of California-Berkeley, University of Florida, Centre National de la Recherche Scientifique-LPN, National Institute of Standards and Technology, Santa Clara University, Stanford University, Universidad Autonoma de Madrid, University of Colorado, University of Minnesota, Pacific Northwest National Laboratory, SLAC/Kavli Institute for Particle Astrophysics and Cosmology, Syracuse University, University of British Columbia, University of Evansville and the University of South Dakota. — Margaret Allen

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    Culture, Society & Family Health & Medicine Learning & Education Student researchers Videos

    Department of Defense awards $2.6 million to SMU STEM program for minority students

    One hundred percent of STEMPREP project students who finish the program attend college and 83 percent go on to graduate school to become physicians, pharmacists, dentists, researchers or engineers.

    The U.S. Department of Defense recently awarded the STEMPREP Project at Southern Methodist University a $2.6 million grant to support its goal of increasing the number of minorities in STEM fields. STEMPREP recruits bright, science-minded minority middle school students for the two-summer classroom phase of the STEMPREP project, then provides high school students with summer opportunities at research labs.

    The program, based at SMU’s Annette Caldwell Simmons School of Education and Human Development, boasts an impressive success rate. One hundred percent of STEMPREP project students who finish the program attend college and 83 percent go on to graduate school to become physicians, pharmacists, dentists, researchers or engineers.

    “Being in this program empowers students,” says Charles Knibb, STEMPREP director of academic affairs, an SMU research professor and a former surgeon.

    According to a 2013 report from the U.S. Census Bureau, African Americans make up 11 percent of the U.S. workforce but only 6 percent of STEM workers. Hispanics make up 15 percent of the U.S. workforce, but just 7 percent of the STEM workforce.

    STEMPREP students intern at laboratories throughout the United States
    Joy Brown-Bryant plans to change those statistics – she would like to be U.S. surgeon general one day. But first, the 14-year-old from Oakland, Calif. wants to help reconstruct the faces of military burn victims as a plastic surgeon. Brown-Bryant is well on her way to achieving her goal.

    Charles Knibb, SMU, Simmons

    She is one of 100 seventh- and eighth-grade STEMPREP students living on the SMU campus for six weeks of college-level biology, chemistry, statistics and research writing classes, daily biochemistry labs, and development of a final in-depth research presentation on a disease.

    After two summers at SMU, students in grades 9 through 12 are ready to work as summer research interns at laboratories at universities, the National Institutes of Health and private industry, with careful mentoring all along the way. This summer, STEMPREP high school and college students are interning in research laboratories in Bethesda, Philadelphia, Vancouver and Dallas.

    Moses Williams, executive director, founded the program in 1990 when he was admissions director for Temple University School of Medicine in Philadelphia.

    “As a gatekeeper, I realized there were not a lot of minorities being considered,” he says. “I wanted to change that.” He compares the program to training young athletes: Identify talent early and then nurture it through practice and coaching.

    STEMPREP students also learn the nonacademic lessons of college life at SMU – sharing a room in a residence hall, selecting their own meals in the campus dining hall and washing their own clothes. “I’m an only child; I’ve always had my own room,” says Stephen Isabell, a seventh-grader from Olney, Md. “Living in a dorm is a lot different than home, but it’s worth it. I’m becoming more independent.”

    STEMPREP students return as counselors to other young scientists
    At SMU, 12 STEMPREP high school seniors have come full circle, returning to the university as counselors to the newest crop of young scientists.
    “Being part of STEMPREP confirmed my decision to become a doctor,” says 18-year-old STEMPREP counselor Feaven Berhe. “In ninth grade when I started working in a research lab studying chemotherapy for breast cancer, I knew I wanted to pursue a medical career.”

    Berhe assisted with breast cancer nanochemotherapy research for two summers at Thomas Jefferson University in Philadelphia and last summer conducted a behavioral study on rats at the National Institute on Drug Abuse. This summer she is assisting with pancreatic cancer research at the University of Texas Southwestern Medical School.

    At 10 p.m. curfew each evening, Berhe checks on the seventh- and eighth-grade students in the residence hall. “It makes me emotional to talk with them,” she says. “They are beginning to realize that they are part of something that is life-changing.” — Nancy George

    SMU is a nationally ranked private university in Dallas founded 100 years ago. Today, SMU enrolls nearly 11,000 students who benefit from the academic opportunities and international reach of seven degree-granting schools. For more information see www.smu.edu.

    The Annette Caldwell Simmons School of Education and Human Development at SMU reflects the University’s vision of serving the most important educational needs of the city, region and nation, graduating students for successful careers in a variety of fields and providing educational opportunities beyond traditional degree programs. The school is committed to rigorous, research-driven programs that promote evidence-based, effective practices in education and human development.

    SMU has an uplink facility located on campus for live TV, radio, or online interviews. To speak with an SMU expert or book an SMU guest in the studio, call SMU News & Communications at 214-768-7650.

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    Culture, Society & Family Mind & Brain Plants & Animals Researcher news SMU In The News Videos

    Business Insider: Your Smartphone Is Destroying Your Sleep

    Business Insider Science Editor Jennifer Walsh tapped the sleep expertise of SMU Assistant Professor of Chemistry Brian D. Zoltowski to explain how artificial light from our smartphones and other digital devices causes sleep deprivation. Her article, “Your Smartphone Is Destroying Your Sleep,” published May 19.

    Zoltowski’s lab at SMU studies one of the many proteins involved in an organism’s circadian clocks. Called a photoreceptor, the protein responds to light to predict time of day and season by measuring day length.

    The circadian clock is an internal biological mechanism that responds to light, darkness and temperature in a natural 24-hour biological cycle. The clock synchronizes body systems with the environment to regulate everything from sleep patterns and hunger in humans to growth patterns and flowering in plants.

    “Our research focuses on understanding the chemical basis for how organisms perceive their surroundings and use light as an environmental cue to regulate growth and development,” Zoltowski says.

    Zoltowski and the American Chemical Society created a video explaining the light-sleep deprivation relationship.

    Read the full story.

    EXCERPT:

    By Jennifer Welsh
    Business Insider

    Artificial light is one of the biggest causes of sleep deprivation in modern humans, but there’s some special witch magic in smartphone and tablet light that really messes with our sleep cycle — essentially forcing us to stay awake by convincing our bodies that it’s actually morning.

    Smartphones do this because they let off bright blue light.

    “One of the best biological cues we have to what time of day it is is light. And it turns out that blue light in particular is very effective at basically predicting when morning is,” chemistry researcher Brian Zoltowski says in the video below, from the American Chemical Society.

    In the evenings, there’s more red light than blue light, which signals your body to prep for bed. The red light does this by interacting with the protein melanopsin in cells deep inside your eyes — ones that are specifically made to regulate circadian rhythms and don’t play a role in how we see.

    When the light hits this protein, it changes, and these cells send a signal to the “master clock” of the brain, which dictates when we wake and when we get sleepy. When it sends a “wake up” signal at night, our body clock gets screwed up.

    The solution to a screwed up body clock? Force yourself to do things at the right time of the day — eating at mealtimes, getting to bed at a normal time, and getting up at a good time as well. And, of course, avoid that blue light at night.

    Read the full story.

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    Culture, Society & Family Learning & Education Mind & Brain Videos

    Low IQ students learn to read at 1st-grade level after persistent, intensive instruction

    Study offers hope for all struggling readers after large sample of special education students and students with low IQ significantly improved their reading ability over several academic years

    The findings of a pioneering four-year educational study offer hope for thousands of children identified with intellectual disability or low IQ who have very little, if any, reading ability.

    The study by researchers at Southern Methodist University, Dallas, is the first large-scale longitudinal study of its kind to demonstrate the reading potential of students with intellectual disability or low IQ, said lead author Jill H. Allor, principal investigator of the study, which was funded by the U.S. Department of Education.

    The researchers found that students with intellectual disability who participated in four years of persistent, specialized instruction successfully learned to read at a first-grade level or higher.

    “This study proves that we should never give up on anyone. It raises expectations for all children,” Allor said. “Traditionally the focus of instruction for students with intellectual disability has been functional skills, such as how to manage their personal hygiene, do basic chores around the house or simple work skills. This study raises academic expectations as well.”

    The study demonstrates there’s hope for every struggling reader, said Allor, a reading researcher whose expertise is reading acquisition. The study’s implications can be life-changing for non-readers and struggling readers.

    “If these children, and any other struggling readers, can learn to read, that means they can go grocery shopping with a shopping list, read the labels on boxes and cans, and read basic instructions,” Allor said. “Even minimal reading skills can lead to a more independent life and improved job opportunities.”

    The findings indicate a critical need for more research to determine ways to streamline and intensify instruction for these students, said Allor, whose research focuses on preventing reading failure among struggling readers.

    “This study demonstrates the potential of students with intellectual disability or low IQ to achieve meaningful literacy goals,” said Allor. “And it also clearly demonstrates the persistence and intensity needed to help children with low IQs learn to read.”

    Students identified with intellectual disability account for nearly one in every 100 public school students, according to the study, which cites the U.S. Department of Education. Of those identified with intellectual disability who do graduate, most don’t receive a diploma, only a certificate of completion, said the study’s authors, all from SMU’s Annette Caldwell Simmons School of Education and Human Development.

    “This article is a call for boldness and the redoubling of our efforts to truly teach all children to read,” said the authors.

    The researchers report the findings, “Is scientifically based reading instruction effective for students with below-average IQs?” in the journal Exceptional Children, published by the Council for Exceptional Children.

    The study was funded with a $3 million grant from the U.S. Department of Education’s Institute of Education Sciences. Allor, professor in the department of teaching and learning in the SMU Simmons School, was principal investigator.

    Successful instruction relied on proven, scientific-based teaching method
    For the study, a group of 141 children was divided into two groups. One group of 76 children received the reading intervention. A group of 65 children was taught in a business-as-usual instructional environment, which included various amounts of reading instruction and methods.

    The children in the intervention group were taught reading 40 to 50 minutes a day in intensive small group settings of one to four students per teacher. Teachers used “Early Interventions in Reading,” a proven curriculum designed by SMU reading specialist and study co-author Patricia G. Mathes and Allor.

    Most of the students entered the study around the age of 7 and variously were identified with disabilities including Down syndrome, autism spectrum disorder, Williams syndrome or a physical disability. All of the students had the ability to speak.

    IQs of the students in the study ranged from 40 to 80. IQ scores in the range of 85 to 115 are considered to be average.

    Instruction was provided by six teachers certified in special education and four part-time teachers certified in general education. Teaching experience ranged from five years to 35 years.

    After four years of the specialized teaching the researchers found that students with mild or moderate intellectual disability could independently read at the first-grade level, and some even higher.

    Students receiving the specialized instruction significantly outperformed the comparison group on a variety of key reading tests.

    Scientifically based reading program put to the test
    The current study also demonstrates the effectiveness of a teaching method that’s scientifically based for use with children identified with intellectual disability or low IQ, said Allor.

    Mathes and Allor, former special education teachers, developed the study’s reading program after research into how children with dyslexia and other learning problems learn to read.

    Teachers providing the intervention received extensive support and training, the authors said. That included multi-day professional development training on curriculum implementation, monthly meetings with the research team to address instructional and behavioral issues, and instructional support from reading coaches who previously taught the intervention.

    The program, previously validated with struggling readers without intellectual disability or low IQ, included a series of brief activities that increased in difficulty that were geared toward phonological awareness, letter knowledge and sounds, sounding out and sight words.

    Fluency was developed from repeated reading in unison to paired reading and independent timed reading, the authors said. Comprehension activities included strategies for both listening and reading comprehension.

    Students used provided materials that included word cards, small readers and activity pages to play reading games or to read aloud with someone else.

    IQ is generally considered a predictor of learning ability, but in this study with students who are intellectually disabled or low IQ, the results showed that IQ didn’t always predict academic achievement. Although generally students with higher IQs improved more quickly, there were many individual cases where a student with a lower IQ outperformed a student with a higher IQ, Allor said.

    Coauthors were Patricia Mathes, TI Endowed Chair in Evidence-Based Education and a professor in the Simmons School; J. Kyle Roberts; Jennifer P. Cheatham, research associate; and Stephanie Al Otaiba, professor.

    The research will continue under a new $1.5 million U.S. Department of Education grant, led by Allor, principal investigator on the grant. Al Otaiba and Paul Yovanoff, both professors in SMU’s new special education program, are co-investigators on the new grant. — Margaret Allen

    For more information, www.smuresearch.com.

    SMU is a nationally ranked private university in Dallas founded 100 years ago. Today, SMU enrolls nearly 11,000 students who benefit from the academic opportunities and international reach of seven degree-granting schools. For more information see www.smu.edu.

    SMU has an uplink facility located on campus for live TV, radio, or online interviews. To speak with an SMU expert or book an SMU guest in the studio, call SMU News & Communications at 214-768-7650.

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    Earth & Climate Fossils & Ruins Student researchers Videos

    Richest marine reptile fossil bed along Africa’s South Atlantic coast is dated at 71.5 mya

    A new study uses carbon isotope dating to determine the first precise age for this bed, and ties the western coast of Africa to 30 million years of global geologic records

    Paleontologists at Southern Methodist University have measured the carbon isotopes in marine fossils to precisely date for the first time 30 million years of sediments along Africa’s South Atlantic shoreline.

    The researchers matched the pattern of ratios of carbon-13 and carbon-12 isotopes in marine fossils from Africa’s South Atlantic shoreline to known patterns of carbon ratios in fossils found elsewhere in the world. From that they determined the age of the coastal sediments at a fossil locality near the southern Angolan village of Bentiaba, said paleontologist Christopher Strganac, lead author on the study.

    The analysis focused on a sequence of shoreline sediments totaling 140 meters thick. Their age spans a timeline of nearly 30 million years, from 95 million years ago to 68 million years ago. That period was about 40 million years after Africa and South America split, allowing the South Atlantic Ocean to slowly emerge.

    Chemostratigraphy and magnetostratigraphy of Bentiaba section. (Credit: Strganac)
    Chemostratigraphy and magnetostratigraphy of Bentiaba section. (Credit: Strganac)

    The analysis revealed that the richest marine reptile fossil bed on Africa’s South Atlantic dated to 71.5 million years ago, he said. This new date at the Bentiaba locality is more than 2 million years older than the estimated date of about 69 million years previously assigned to those marine beds by earlier researchers.

    Africa’s South Atlantic coast is remarkable in plate tectonics as the place where part of the prehistoric supercontinent Gondwana split 130 million years ago into what we now call Africa and South America.

    Strganac 150x120

    “The precise age for these rocks allows better understanding of the ancient life and environments at Bentiaba by placing them accurately within the history of the ancient South Atlantic,” said Strganac, a doctoral student in SMU’s Roy M. Huffington Department of Earth Sciences. “It’s a benchmark now from the Southern Hemisphere with which we can better understand ancient life at that time.”

    The precise dating was made possible by new scientific dating techniques. The age of the rocks hadn’t previously been assessed because Africa’s South Atlantic shore — noted for its puzzle-like fit with South America — has few localities with well-exposed rocks of this age. Also, it has been essentially unexplored by scientific expeditions since the 1960s largely because war and unrest prevented exploration in the previous century.

    The new measurements stem from the work of Projecto PaleoAngola, an international team of scientists who in recent years have explored Angola and discovered an abundance of fossils. Their discoveries include the bones of dinosaurs, whales, mosasaurs and other ancient life from what is the richest marine reptile fossil bed along the South Atlantic coast.

    Strganac and his co-authors report their findings in the Journal of African Earth Sciences. The article, “Carbon isotope stratigraphy, magnetostratigraphy, and 40Ar/39AR age of the Cretaceous South Atlantic coast, Namibe Basin, Angola,” is available online through open access at http://bit.ly/1v4r8xi.

    “This improvement in understanding the ages of the rocks along the shore is a great first step in trying to understand the climatic and evolutionary events that accompanied the growth of this ocean,” said vertebrate paleontologist Louis L. Jacobs, also a co-author on the study and co-leader of Projecto PaleoAngola. Jacobs describes Angola as “an untapped frontier” for fossil hunters.

    Aids in new knowledge of climate, temperature and vegetation
    Scientists have recognized since the 1960s that ancient supercontinents split apart and their remnants drifted to the current positions of today’s continents over the course of millions of years. One of the results was the creation of vast new oceans. Little is known of the vertebrate life that lived during that time along the eastern and western margins of the emerging South Atlantic Ocean.

    Fossils being discovered now by Projecto PaleoAngola hold the key to understanding the South Atlantic Ocean’s ancient past. Analysis of the fossils sheds light on the paleoenvironment, including changes in climate, temperature, vegetation and ecology.

    The geologic time period covered by the 30-million-year sequence represents the Late Cretaceous. Studies have shown it was a period of dramatic change in climate, beginning with one of the warmest periods on Earth, then starting to transition to cooler climates, Strganac said.

    Determining carbon ratios allowed comparison with global geologic events
    To discover the age of the sediments, Strganac tested 55 fossil shells of ancient oysters and clams from 40 different rock layers on the coast. Testing determined the ratio of stable carbon isotopes, carbon-13 and carbon-12, in each shell. Because these isotopes do not decay with time, the relative abundance of each relates to the ocean when the shells formed. These isotope ratios can be compiled as a sequence with the rock layers, producing a pattern of carbon isotope change in the ancient oceans through millions of years. To accurately date the rocks, Strganac matched the pattern in isotope ratios in the shell record at Angola with the pattern known from ancient geologic events that occurred elsewhere in the world.

    Specifically, the red rift-valley layers at Bentiaba were deposited as Africa and South America began to split. Also observed in the layers are a reversal in the Earth’s magnetic polarity at 71.4 million to 71.64 million years to delimit the age of marine fossils; rocks deposited in the South Atlantic Ocean 93.9 million years ago during an oceanic anoxic event; and rocks south of Bentiaba that bracket the mass extinction of dinosaurs at 66 million years.

    Besides comparing the stable carbon isotopes, other measuring techniques included: magnetostratigraphy, which measures the ancient polarity of the Earth’s magnetic field when various sedimentary layers were deposited; and argon-argon radiometric dating of a volcanic basalt layer at the site, which measures the radioactive decay of potassium to argon and dates the cooling of the volcanic lava to 85 million years ago.

    “Adding a new ocean to the globe, in this case the South Atlantic, has many long-lasting effects,” said SMU’s Jacobs. “One obvious example is the formation of energy resources found along the coasts of Brazil and Angola.”

    The research was funded in part by the National Geographic Society and the Petroleum Research Fund of the American Chemical Society. — Margaret Allen

    Follow SMUResearch.com on Twitter.

    For more information, www.smuresearch.com.

    SMU is a nationally ranked private university in Dallas founded 100 years ago. Today, SMU enrolls nearly 11,000 students who benefit from the academic opportunities and international reach of seven degree-granting schools. For more information see www.smu.edu.

    SMU has an uplink facility located on campus for live TV, radio, or online interviews. To speak with an SMU expert or book an SMU guest in the studio, call SMU News & Communications at 214-768-7650.[/fusion_builder_column][/fusion_builder_row][/fusion_builder_container]

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    Earth & Climate Energy & Matter Researcher news Videos

    NOvA experiment glimpses neutrinos, one of nature’s most abundant, and elusive particles

    Ghostly particles that constantly bombard us can offer clues to the early moments of our universe

    Scientists hunting one of nature’s most elusive, yet abundant, elementary particles announced today they’ve succeeded in their first efforts to glimpse neutrinos using a detector in Minnesota.

    Neutrinos are generated in nature through the decay of radioactive elements and from high-energy collisions between fundamental particles, such as in the Big Bang that ignited the universe.

    Light and ghostly, however, they are unaffected by magnetic fields and travel at the speed of light.

    The neutrinos that currently bombard the earth from space are mostly produced by the nuclear reactions that power our sun.

    More than 200 physicists from around the world collaborate on the massive neutrino experiment called NOvA, which has taken a decade to design and build.

    Their goal is to discover more details about neutrinos, which were theorized in 1930 and first observed in 1956.

    The NOvA detector viewed from Google earth
    The NOvA detector viewed from Google earth. Click to enlarge.

    “These first few neutrino events are a confirmation that NOvA’s basic detector design and construction that dozens of people have worked on for a good fraction of a decade are sound,” said Thomas E. Coan, an associate professor in the SMU Department of Physics, who is a researcher in the NOvA collaboration.

    Studying neutrinos could yield crucial information about the early moments of the universe, Coan said.

    “Neutrinos are fascinating. They are, besides light, the most numerous particle in the universe yet are notoriously difficult to study since they interact with the rest of matter so feebly,” he said. “Produced in many venues, from laboratories to stars and even bones, they may be their own anti-particles and perhaps play a key role in explaining why any matter at all exists today and survived annihilation with its sister anti-matter produced all the way back in the Big Bang, many billions of years ago.”

    NOvA is the world’s longest-distance neutrino experiment
    The NUMI Off-Axis electron neutrino Appearance, or NOvA, is the world’s longest-distance neutrino experiment. It consists of two huge particle detectors placed 500 miles apart, and its job is to explore the properties of an intense beam of neutrinos.

    “NOvA represents a new generation of neutrino experiments,” said Fermilab Director Nigel Lockyer. “We are proud to reach this important milestone on our way to learning more about these fundamental particles.”

    Scientists generate a beam of the particles for the NOvA experiment using one of the world’s largest accelerators, located at the Department of Energy’s Fermi National Accelerator Laboratory near Chicago. They aim this beam in the direction of the two particle detectors, one near the source at Fermilab and the other in Ash River, Minn., near the Canadian border. The detector in Ash River is operated by the University of Minnesota under a cooperative agreement with the Department of Energy’s Office of Science.

    Billions of those particles are sent through the earth every two seconds, aimed at the massive detectors. Once the experiment is fully operational, scientists will catch a precious few each day.

    “It is both intellectually and emotionally satisfying,” said SMU’s Coan, “akin to a great adventure, to be detecting neutrinos in Northern Minnesota that are produced some 500 miles to the south at Fermi National Laboratory near Chicago, after making thousands of engineering and scientific decisions that had to be spot-on to see these events.”

    Scientists will use NOvA to understand three changing flavors of neutrinos
    Neutrinos are curious particles. They come in three types, called flavors, and change between them as they travel. The two detectors of the NOvA experiment are placed so far apart to give the neutrinos the time to oscillate from one flavor to another while traveling at nearly the speed of light. Even though only a fraction of the experiment’s larger detector, called the far detector, is fully built, filled with scintillator and wired with electronics at this point, the experiment has already used it to record signals from its first neutrinos.

    “That the first neutrinos have been detected even before the NOvA far detector installation is complete is a real tribute to everyone involved,” said University of Minnesota physicist Marvin Marshak, Ash River Laboratory director. “This early result suggests that the NOvA collaboration will make important contributions to our knowledge of these particles in the not so distant future.”

    Once completed, NOvA’s near and far detectors will weigh 300 and 14,000 tons, respectively. Crews will put into place the last module of the far detector early this spring and will finish outfitting both detectors with electronics in the summer.

    The NOvA collaboration is made up of 208 scientists from 38 institutions in the United States, Brazil, the Czech Republic, Greece, India, Russia and the United Kingdom. The experiment receives funding from the U.S. Department of Energy, the National Science Foundation and other funding agencies.

    The NOvA experiment is scheduled to run for six years. Because neutrinos interact with matter so rarely, scientists expect to catch just about 5,000 neutrinos or antineutrinos during that time. Scientists can study the timing, direction and energy of the particles that interact in their detectors to determine whether they came from Fermilab or elsewhere.

    “Seeing neutrinos in the first modules of the detector in Minnesota is a major milestone”
    Fermilab creates a beam of neutrinos by smashing protons into a graphite target, which releases a variety of particles. Scientists use magnets to steer the charged particles that emerge from the energy of the collision into a beam. Some of those particles decay into neutrinos, and the scientists filter the non-neutrinos from the beam.

    Fermilab started sending a beam of neutrinos through the detectors in September, after 16 months of work by about 300 people to upgrade the lab’s accelerator complex.

    Different types of neutrinos have different masses, but scientists do not know how these masses compare to one another. A goal of the NOvA experiment is to determine the order of the neutrino masses, known as the mass hierarchy, which will help scientists narrow their list of possible theories about how neutrinos work.

    “Seeing neutrinos in the first modules of the detector in Minnesota is a major milestone,” said Fermilab physicist Rick Tesarek, deputy project leader for NOvA. “Now we can start doing physics.” — Andre Salles, Fermilab, and Margaret Allen, SMU

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    USA Today: Bitcoin tumbles after China crackdown

    “The currency that is supposedly beyond state control is actually still within the grip of governments …” — Tyler Moore

    Journalists Alistair Barr and Kim Hjelmgaard with USA Today tapped the expertise of SMU Bitcoin and cybersecurity expert Tyler W. Moore, an assistant professor of computer science in the Lyle School of Engineering.

    Moore’s expertise draws in part on his research that found that online money exchanges that trade hard currency for the rapidly emerging cyber money known as Bitcoin have a 45 percent chance of failing — often taking their customers’ money with them.

    The finding is from a computer science study in which Moore applied survival analysis to examine the factors that prompt Bitcoin currency exchanges to close.

    Tyler Moore, SMU Bitcoin
    Meltzer marital happiness gut reaction
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    Moore carried out the research with Nicolas Christin, with the Information Networking Institute and Carnegie Mellon CyLab at Carnegie Mellon University.

    USA Today’s coverage, “Bitcoin tumbles after China crackdown,” was published online Dec. 18.

    Read the full story.

    EXCERPT:

    By Alistair Barr
    and Kim Hjelmgaard
    USA Today

    Bitcoin was supposed to be beyond the reach of governments, but investors in the virtual currency are realizing that is not the case.

    The price of a Bitcoin slumped Wednesday after China’s largest exchange for the virtual currency said it would stop accepting deposits in yuan — China’s local currency.

    The much-ballyhooed Bitcoin currency has lost more than half its value since hitting records above $1,100 at the end of November. On Wednesday, the price of a Bitcoin fell 18% to $558 and traded as low as $422.50 earlier in the day, according to an index run by CoinDesk, a website focused on digital currencies.

    The exchange, BTC China, had to “temporarily stop its yuan account recharging functions,” according to comments it made on Weibo, a popular Chinese micro-blogging service similar to Twitter.

    “Bitcoin is inherently volatile, but the decision by this large exchange has played a role,” said Tyler Moore, a Southern Methodist University assistant professor in computer science who has studied Bitcoin. “Stopping new deposits prevents new Chinese investors from piling more yuan into Bitcoin, eliminating some of the demand.”

    Bitcoin is a digital currency and payment method that is not regulated by any government. Instead, software controls how many Bitcoins are produced, leaving it less prone to the whims of central banks, some of which have caused inflation in the past by printing too much paper currency.

    The Bitcoin software first emerged in 2009 via a person or group using the name Satoshi Nakamoto. Since then, many other developers have jumped on board to support the currency and make it more accessible to consumers and investors.

    Read the full story.

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    New fossil species discovered in Mozambique reveals new data on ancient mammal relatives

    256-million-year-old Niassodon mfumukasi is the first new genus and species of a fossil vertebrate from Mozambique, and its species is a distant relative of living mammals

    A new species and genus of fossil vertebrate has been identified from the remote province of Niassa in Mozambique, according to an international team of paleontologists.

    The species is a distant relative of living mammals and is approximately 256 million years old, the researchers reported Dec. 4 in the scientific journal PLoS ONE.

    The new species belongs to a group of animals called synapsids. Synapsida includes a number of extinct lineages that dominated land communities during the Late Permian from 260 million years ago to 252 million years ago. Synapsida also includes some living mammals and their direct ancestors, including humans.

    Rare example is a fossil first for Mozambique
    Niassodon mfumukasi is the first new genus and species of a fossil vertebrate from Mozambique. Its name-bearing specimen, called a holotype, is a rare example of a basal synapsid that preserves the skull and much of the skeleton together, the scientists reported.

    A female Niassodon mfumukasi protecting its calf in its natural environment by the end of the Permian (~256Ma). Illustrated by Fernando Correia.‬
    A female Niassodon mfumukasi protecting its calf in its natural environment by the end of the Permian (~256Ma). Illustrated by Fernando Correia.‬

    “Mozambique is an unexplored country paleontologically,” said Ricardo Araújo, a paleontologist at Southern Methodist University, Dallas, and a member of the scientific team.

    “The patterns that have been observed in sedimentary basins of the surrounding African countries of similar age show high levels of species unique to the basin, thus restricted geographically,” said Araújo.

    It was interesting to observe the same pattern repeating in Mozambique, Araújo said, especially with such a pristinely preserved specimen.

    “This specimen was so well-preserved that we even observed the complete anatomy of certain skull bones that have never been observed, despite more than 150 years of research in this group of animals: the dicynodonts,” he said.

    International team of paleontologists named new fossil as a tribute to Mozambique
    The fossil was named Niassodon mfumukasi, which in the local Chiyao language means “the queen of Lake Niassa.” The name is a tribute to the Yao matriarchal society, to the women of Mozambique and to the beauty of Lake Niassa.

    A team of paleontologists from nine institutions in Mozambique, Portugal, the United States and Germany described the anatomy of Niassodon in “Bringing dicynodonts back to life: paleobiology and anatomy of a new emydopoid genus from the Upper Permian of Mozambique,” in PLoS ONE.

    Leading the research were: SMU’s Araújo in the Roy M. Huffington Department of Earth Sciences and Portugal’s Museu da Lourinhã, Rui Castanhinha Instituto Gulbenkian de Ciência and Museu da Lourinhã, and Luís Costa Junior, National Museum of Geology in Maputo, under the auspices of Projecto PalNiassa.

    Dorsal view of the Niassodon mfumukasi skull.
    Dorsal view of the Niassodon mfumukasi skull.

    Projecto PalNiassa is an international, multidisciplinary scientific collaboration that includes more than two-dozen scientists from three different continents. The goal of the project is to find, study and preserve the paleontological heritage of Mozambique.

    3D tomography reconstructed fossil’s bones and built virtual model of brain
    By using micro-computed tomography it was possible to reconstruct digitally not only the bones of Niassodon but also to build a virtual model of its brain. This reveals new information on the brain anatomy of early synapsids, which is important for understanding the evolution of many features of the mammalian brain.

    The reconstruction of the brain and inner ear anatomy developed for Niassodon is the most detailed presented to date for an early synapsid. Using the digital data acquired in the tomographies it was possible to isolate all individual bones preserved, which allowed the researchers to create a new topological color code, codified mathematically, for the cranial bones. This code will allow the researchers to standardize the colors used in similar digital models built for other animals.

    The fossil can be visited in Portugal’s Lourinhã Museum, but will return soon to the collection of the National Museum of Geology in Maputo, Mozambique.

    The specimen was collected during fieldwork in 2009 with the support of National Museum of Geology, and was prepared at Portugal’s National Museum of Geology, the Instituto Gulbenkian de Ciência, Oeiras, Portugal, and at SMU.

    The 3D tomography was performed at German Electron Synchrotron-Helmholtz Association of German Research Centers, Hamburg, Germany. The project was sponsored by Fundação Calouste Gulbenkian, National Geographic Society and TAP Portugal.

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    Chemical probe confirms that body makes its own rotten egg gas, H2S, to benefit health

    Chemists develop chemical probe to help scientists study mechanics of critical signaling molecules, such as H2S, and to study how hydrogen sulfide benefits cardiovascular health

    A new study confirms directly what scientists previously knew only indirectly: The poisonous “rotten egg” gas hydrogen sulfide is generated by our body’s growing cells.

    Hydrogen sulfide, or H2S, is normally toxic, but in small amounts it plays a role in cardiovascular health.

    In the new study, chemists developed a chemical probe that reacts and lights up when live human cells generate hydrogen sulfide, says chemist Alexander R. Lippert, Southern Methodist University, Dallas. The discovery allows researchers to observe the process through a microscope.

    The researchers captured on video the successful chemical probe at work, said Lippert, an assistant professor in the SMU Department of Chemistry.

    “We made a molecular probe that, when it reacts with hydrogen sulfide, forms a fluorescent compound that can be visualized using fluorescence microscopy,” Lippert said. “This is the first time that endogenously generated hydrogen sulfide has been directly visualized in a living system. This confirms a lot of hypotheses that scientists have, but no one had the tools to directly detect it in real time.”

    H2S is one of several small gaseous molecules increasingly recognized as key signaling molecules in the body. For example, H2S helps reduce high blood pressure. Scientists discovered in the past decade that cells in the human body generate small quantities of H2S molecules, which in turn deliver information to proteins. The proteins act on the information to perform critical functions in the body.

    Previously, scientists couldn’t observe H2S being generated in live cells. As a result, researchers faced challenges when studying hydrogen sulfide in living systems, Lippert said. The new discovery now provides a tool to view directly how and when hydrogen sulfide is generated, he said. Lippert and study co-author chemist Vivian S. Lin made the discovery.

    Discovery provides research tool for scientists to observe H2S in live cells
    “Having the tools to do this in living systems is going to open up a lot of possibilities and experiments for scientists,” Lippert said. “As a tool, this will allow researchers to ask questions that weren’t possible before.”

    Lippert’s real-time video features live human cells, taken from the lining of blood vessels and treated with the chemical probe and with a protein known to promote cell growth. Once the cells start generating H2S, they behave like squiggly fluorescent green worms.

    The researchers’ scientific article, “Cell-trappable fluorescent probes for endogenous hydrogen sulfide signaling and imaging H2O2-dependent H2S production,” was published online in the Proceedings of the National Academy of Sciences.

    Lippert and Lin authored the research with Christopher J. Chang, principal investigator. Lin is a PhD candidate at the University of California at Berkeley. Chang is with the Howard Hughes Medical Institute, University of California at Berkeley. Lippert and Lin carried out the research in Chang’s UC Berkeley laboratory.

    Discovery can help scientists attack diseases such as cancer
    H2S — along with nitric oxide, carbon monoxide and others in this emerging class of gaseous signaling molecules — assists the body’s large proteins.

    Large proteins do much of the functional work in the body, such as digesting the food we eat and harnessing the energy in the oxygen we breathe. Their size, however, forces them to move slowly inside the cell. In contrast, H2S and other small gaseous molecules diffuse quickly and easily across cellular membranes, enabling them to travel much faster and rapidly deliver information that mediates critical functions, such as blood pressure regulation, Lippert said.

    For their experiments, Lippert and Lin placed living endothelial cells cultured from the internal lining of a blood vessel into a petri dish under a microscope.

    Lippert and Lin then added a chemical solution containing an azide-functionalized organic molecule that they’d synthesized to act as a molecular probe. They gave the cells time to absorb the probe, then added a protein solution known to stimulate blood vessel formation. As the cells initiated blood vessel formation, H2S was generated. In reaction, the scientists observed a steady increase in the probe’s fluorescence.

    “Essentially we’re observing the initial events that lead to the building of new blood vessels, a process that’s active in babies as they develop, or in women during their menstruation cycles,” Lippert said. “We see the cells get really bright as they start moving around and ruffling their membranes. That’s the H2S being formed. In the control group, which weren’t stimulated with the growth protein, they don’t get any brighter and they don’t move around.”

    The discovery provides new insights that can help scientists attack diseases, such as cancer, by starving the nutrient supply to a tumor, Lippert said.

    “When tumors grow they need a lot of blood support because they need the nutrients to support their rapid growth,” he said. “If you can stop blood vessel formation you could starve the tumor and the tumor will die. So inhibiting H2S formation might be a way to treat cancer using this method.” — Margaret Allen

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    Study finds that newlyweds who are satisfied with marriage are more likely to gain weight

    Findings challenge notion that quality relationships always benefit health, indicating that satisfied spouses gain weight over time because they may be less motivated to attract an alternative mate

    On average, young newlyweds who are satisfied with their marriage gain weight in the early years after they exchange vows, putting them at increased risk for various health problems related to being overweight.

    That is the finding of a new study on marital satisfaction and weight gain, according to psychologist Andrea L. Meltzer, lead researcher and an assistant professor in the Department of Psychology at Southern Methodist University in Dallas.

    “On average, spouses who were more satisfied with their marriage were less likely to consider leaving their marriage, and they gained more weight over time,” Meltzer said. “In contrast, couples who were less satisfied in their relationship tended to gain less weight over time.”

    SMU Lyle School of Engineering
    SMU, Project Support, Department of Psychology

    The study’s researchers said the findings challenge the long-held notion that quality relationships are always beneficial to one’s health. Instead, they said, the findings suggest that spouses who are satisfied in the marriage are less motivated to attract an alternative mate. As a result, satisfied spouses relax efforts to maintain their weight.

    The article, “Marital satisfaction predicts weight gain in early marriage,” is published online in the scientific journal Health Psychology at www.ncbi.nlm.nih.gov/pubmed/23477578.

    The study was based on data from 169 first-married newlywed couples whose marital satisfaction and weight were tracked over the course of four years.

    Marriage associated with weight gain; divorce associated with weight loss
    Previous psychological research has established that marriage is associated with weight gain and that divorce is associated with weight loss. But the role of marital satisfaction in those changes in weight is less clear, Meltzer said.

    Previous research also has demonstrated that marital satisfaction is associated with health maintenance behaviors, she said.

    “For example, studies have found that satisfied couples are more likely to take medications on time and schedule annual physicals,” Meltzer said. “Yet the role of marital satisfaction and actual health is less clear.”

    Meltzer set out to examine the association between marital satisfaction and changes in weight over time.

    For four years, the newlyweds reported twice a year on their marital satisfaction and steps toward divorce. They also reported their height and weight, which was used to calculate their body mass indices.

    Focus on maintaining weight is more about appearance than health?
    Spouses who were less happy in their marriage were more likely to consider leaving their partner, Meltzer said, and on average gained less weight over time.

    “So these findings suggest that people perhaps are thinking about their weight in terms of appearance rather than health,” she said.

    The study suggests young couples should be educated and encouraged to think about their weight as a factor of maintaining their health.

    “We know that weight gain can be associated with a variety of negative health consequences, for example diabetes and cardiovascular disease,” Meltzer said. “By focusing more on weight in terms of health implications as opposed to appearance implications, satisfied couples may be able to avoid potentially unhealthy weight gain over time in their marriages.”

    Besides Meltzer, co-authors are James K. McNulty, Florida State University; Sara A. Novak, Hofstra University; Emily A. Butler, University of Arizona; and Benjamin R. Karney, University of California, Los Angeles.

    The research was funded by the National Institute of Mental Health; the Fetzer Institute; and the National Institute of Child Health and Development. — Margaret Allen

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    Fruit flies fed organic diets are healthier than flies fed nonorganic diets, study finds

    Fruit flies raised on diets based on organic foods performed better on a variety of health tests, including fertility and longevity

    A new study looking at the potential health benefits of organic versus non-organic food found that fruit flies fed an organic diet recorded better health outcomes than flies fed a nonorganic diet.

    The study from the lab of SMU biologist Johannes H. Bauer, Southern Methodist University, Dallas, found that fruit flies raised on diets of organic foods performed better on several tests for general health.

    “While these findings are certainly intriguing, what we now need to determine is why the flies on the organic diets did better, especially since not all the organic diets we tested provided the same positive health outcomes,” said Bauer, principal investigator for the study.

    Fruit flies on organic diets showed improvements on the most significant measures of health, namely fertility and longevity, said high school student researcher Ria Chhabra.

    “We don’t know why the flies on the organic diet did better. That will require further research. But this is a start toward understanding potential health benefits,” said Chhabra, a student at Clark High School in Plano, Texas, who led the experiment.

    Chhabra sought to conduct the experiments after hearing her parents discuss whether it’s worth it to buy organic foods to achieve possible health benefits.

    Bauer, an assistant professor in SMU’s Department of Biological Sciences, mentored Chhabra by helping guide and design her research experiments. The research focus of Bauer’s fruit fly lab is nutrition and its relationship to longevity, health and diabetes.

    “It’s rare for a high school student to have such a prominent position in the lab. But Ria has tremendous energy and curiosity, and that convinced me to give this research project a try,” Bauer said.

    The findings, “Organically grown food provides health benefits to Drosophila melanogaster,” have been published in the open access journal PLOS One. Buaer and Chhabra co-authored the paper with Santharam Kolli, a research associate at SMU. The article is available from PLOS One online at http://bit.ly/RGB8LJ.

    Flies on organic food performed better on some health tests
    “The data demonstrated that flies raised on organic food extracts by-and-large performed better on the majority of health tests,” reported the researchers.

    It remains unclear why organic diets delivered better health, the researchers said.

    The Bauer lab results come at a time when the health effects of organic food are widely debated.

    Prior studies by other researchers have found conflicting results when reviewing the scientific literature for data. While several studies have shown elevated nutrient content and lower pesticide contamination levels in organic food, a recent publication reporting a large-scale analysis of all available studies concluded no clear trend was apparent.

    Fruit flies were fed extracts from produce purchased at a grocery store
    In order to investigate whether organic foods are healthier for consumers, the lab utilized one of the most widely used model systems, the fruit fly Drosophila melanogaster. Because of the low costs associated with fly research and the fly’s short life cycle, researchers use fruit flies to study human diseases, from diabetes to heart function to Alzheimer’s disease.

    The Bauer lab fruit flies were fed organic and nonorganic produce purchased from a leading national grocery retailer of organic and conventional foods. The flies were fed extracts made from organic and conventional potatoes, soybeans, raisins and bananas. They were not fed any additional nutritional supplements. The researchers tested the effects of each food type independently and avoided any confounding effects of a mixed diet.

    The health tests measured longevity, fertility, stress and starvation resistance.

    Findings suggest beneficial health effects dependent on specific foods
    Some negative or neutral results were obtained using diets prepared from organic raisins, which suggests the beneficial health effects of organic diets are dependent on the specific food item, Bauer said. That might explain some of the inconsistent results in the published studies in the scientific literature, he said, noting some studies suggest there is a nutritional benefit from organic food, while others suggest there is not.

    “To our surprise, in the majority of our tests of flies on organic foods, the flies fed organic diets did much better on our health tests than the flies fed conventional food,” Bauer said. “Longevity and fertility are the two most important aspects of fly life. On both of these tests, flies fed organic diets performed much better than flies fed conventional diets. They lived longer, had higher fertility, and had a much higher lifetime reproductive output.”

    Factors such as soil condition and latitude where the produce was grown weren’t considered, mimicking a typical grocery store shopping experience. — Margaret Allen

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    White dwarf supernovae are discovered in Virgo Cluster galaxy and in sky area “anonymous”

    Observation of two bright exploding stars improves the astronomical “tape measure” that scientists use to calculate the acceleration of the expansion of the universe

    Light from two massive stars that exploded hundreds of millions of years ago recently reached Earth, and each event was identified as a supernova.

    A supernova discovered Feb. 6 exploded about 450 million years ago, said Farley Ferrante, a graduate student at Southern Methodist University, Dallas, who made the initial observation.

    The exploding star is in a relatively empty portion of the sky labeled “anonymous” in the faint constellation Canes Venatici. Home to a handful of galaxies, Canes Venatici is near the constellation Ursa Major, best known for the Big Dipper.

    A second supernova discovered Nov. 20 exploded about 230 million years ago, said Ferrante, who made the initial observation. That exploding star is in one of the many galaxies of the Virgo constellation.

    Both supernovae were spotted with the Robotic Optical Transient Search Experiment‘s robotic telescope ROTSE3b, which is now operated by SMU graduate students. ROTSE3b is at the McDonald Observatory in the Davis Mountains of West Texas near Fort Davis.

    The supernova that exploded about 450 million years ago is officially designated Supernova 2013X. It occurred when life on Earth consisted of creatures in the seas and oceans and along coastlines. Following naming conventions for supernova, Supernova 2013X was nicknamed “Everest” by Govinda Dhungana, an SMU graduate student who participated in the discovery.

    The supernova that exploded about 230 million years ago is officially designated Supernova 2012ha. The light from that explosion has been en route to Earth since the Triassic geologic period, when dinosaurs roamed the planet. “That’s fairly recent as these explosions go,” Ferrante said. Dhungana gave the nickname “Sherpa” to Supernova 2012ha.

    Type 1a supernovae help measure cosmic distances
    Everest and Sherpa are two of about 200 supernovae discovered worldwide in a given year. Before telescopes, supernovae observations were rare — sometimes only several every few centuries, according to the scientists.

    “Everest and Sherpa aren’t noteworthy for being the youngest, oldest, closest, furthest or biggest supernovae ever observed,” Ferrante said. “But both, like other supernovae of their kind, are important because they provide us with information for further science.”

    Everest and Sherpa are Type 1a supernovae, the result of white dwarf explosions, said Robert Kehoe, physics professor and leader of the SMU astronomy team in the SMU Department of Physics.

    The scientists explain that a white dwarf is a dying star that has burned up all its energy. It is about as massive as the Earth’s sun. It’s core is about the size of the Earth. The core is dense, however, and one teaspoon of it weighs as much as Mount Everest, Kehoe said.

    A white dwarf explodes if fusion restarts by tugging material from a nearby star, according to the scientists. The white dwarf grows to about one and a half times the size of the sun. Unable to support its weight, Kehoe said, collapse is rapid, fusion reignites and the white dwarf explodes. The result is a Type 1a supernova.

    “We call these Type 1a supernovae standard candles,” Ferrante said. “Since Type 1a supernovae begin from this standard process, their intrinsic brightness is very similar. So they become a device by which scientists can measure cosmic distance. From Earth, we measure the light intensity of the exploded star. As star distances from Earth increase, their brilliance diminishes.”

    While Sherpa is a standard Type 1a, Everest is peculiar. It exhibits the characteristics of a Type 1a called a 1991T, Ferrante said.

    “Everest is the result of two white dwarfs that collide, then merge,” he said.

    The brightness of Sherpa’s explosion was a magnitude 16, which is far dimmer than can be seen with the naked eye. Everest’s explosion was even dimmer, a magnitude 18.

    For perspective, light travels 5.88 trillion miles in a year. The sun is 93 million miles from Earth, so light from the sun reaches Earth in eight minutes.

    Supernovae help in search to understand mysterious dark energy
    Like other Type 1a supernovae, Everest and Sherpa provide scientists with a tiny piece to the puzzle of one of the greatest mysteries of the universe: What is dark energy?

    Every Type 1a supernova provides astronomers with indirect information about dark energy, which makes up 73 percent of the mass-energy in the universe. It’s theorized that dark energy explains the accelerating expansion of our universe at various epochs after the Big Bang.

    “Every exploding star observed allows astronomers to more precisely calibrate the increasing speed at which our universe is expanding,” Ferrante said. “The older the explosion, the farther away, the closer it was to the Big Bang and the better it helps us understand dark energy.”

    Hobby-Eberly spectrogram confirms discovery of supernovae
    Everest’s discovery was confirmed by a spectrogram obtained Feb. 10 with the Hobby-Eberly Telescope, also at McDonald Observatory. Everest is located in a host galaxy identified as 2286144 in the Principal Galaxies Catalog.

    A spectrogram obtained Nov. 29 with the Hobby-Eberly Telescope confirmed Sherpa’s discovery in one of the many galaxies of the Virgo Cluster.

    The Central Bureau for Astronomical Telegrams of the International Astronomical Union officially designated the discoveries as Supernova 2013X and Supernova 2012ha.

    Ferrante and Dhungana made both discoveries as part of an international collaboration of physicists from nine universities. Everest and Sherpa were discovered with a fully automated, remotely controlled robotic telescope at the University of Texas’ McDonald Observatory. The discovery is a first for the SMU collaboration members.

    The telescope, ROTSE, constantly scans the skies for any significant changes, such as supernovae, novae and variable stars. Data from the telescope are reviewed daily by Ferrante, Dhungana and other scientists on the team, who search for signs of stellar activity.

    Until now, primary responsibility for the management and operation of ROTSE3b was held by the University of Michigan. The SMU team took over that responsibility starting in Fall 2012. The ownership transfer will be completed by summer 2013, said SMU’s Kehoe.

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    Study finds Jurassic ecosystems were similar to modern: Animals flourish among lush plants

    CO2 levels in fossil soils from the Late Jurassic confirm that climate, vegetation and animal richness varied across the planet 150 million years ago, suggesting future human changes to global climate will heavily impact plant and animal life.

    In modern ecosystems, it’s widely known that animals flourish in regions where the climate and landscape produce lush vegetation.

    A new study set out to discover whether that same relationship held true 150 million years ago during the Late Jurassic when dinosaurs roamed the Earth.

    “The assumption has been that ancient ecosystems worked just like our modern ecosystems,” said paleontologist and lead author Timothy S. Myers, Southern Methodist University, Dallas. “We wanted to see if this was, in fact, the case.”

    To test the theory, Myers analyzed fossil soils from the Late Jurassic by measuring the ratios of carbon isotopes. His analysis indicated that the Jurassic soils contained high levels of CO2 from vegetation.

    Nodules of ancient soil are fairly common in present day rock, forming as a result of seasonally dry conditions. They harden into mineralized clods, making them easy to spot and sample as they weather out of ancient soil profiles. (Image: Myers)

    From that, Myers was able to infer the presence of lush plant life in certain regions during the Jurassic. The soils came from locales where scientists previously have gathered animal fossils — North America, Europe and Africa. Combining the data with the known fossil sampling allowed Myers to confirm that the modern relationship between animals and vegetation held true even millions of years ago.

    “Our analysis represents the first time that anyone has tried to apply ecological modeling to this relationship in the fossil record,” Myers said.

    Relatively few places in the world are well-sampled for terrestrial fossils, so Myers’ discovery of a new use for an already existing method represents a useful tool, he said. The new use allows scientists to tap the geochemical data of soils from anywhere in the world and from other geologic time periods to infer the relative abundance of plants and animals, particularly for areas where fossils are lacking.

    “This not only provides a more complete picture of the ancient landscape and climate in which ancient animals lived,” Myers said. “It also illustrates that climate and biota have been ecologically connected for many millions of years and that future human-caused changes to global climate will have profound impacts on plant and animal life around the world.”

    Myers and his co-researchers reported the findings in Paleobiology, “Estimating Soil pCO2 Using Paleosol Carbonates: Implications for the Relationship Between Primary Productivity and Faunal Richness in Ancient Terrestrial Ecosystems.”

    Co-authors were SMU sedimentary geochemist Neil J. Tabor and paleontologists Louis L. Jacobs, SMU, and Octávio Mateus, New University of Lisbon, Portugal.

    “Devising new and creative methods to understand how Earth and life have functioned together in the past is the foundation for predicting the future of life on our planet,” said Jacobs, a vertebrate paleontologist and professor in SMU’s Roy M. Huffington Department of Earth Sciences. “It is the only approach that provides a long enough perspective of what is possible.”

    New method applied to old hypothesis confirms regional variability
    Typically researchers count the number of animal species discovered in a region to determine how many different types of animals once lived there. Scientists call that a measure of faunal richness.

    Myers took a different approach. Using a traditional method typically used to estimate carbon dioxide in the ancient atmosphere, Myers instead applied it to estimate the amount of CO2 in ancient soils.

    Measurements were taken from nodules of calcite that form in soil as a result of wet and dry seasons. These nodules take on the isotopic signature of the CO2 gas around them, which is a mixture derived from two sources: the atmosphere, which leaves a more positive isotopic signature, and plants decaying in the soil, which leave a more negative isotopic signature.

    A higher volume of CO2 from plants indicates a lusher, wetter environment.

    “There’s a lot more litter fall in an environment with a lot of plants, and that produces a lot of organic material in the soil, creating CO2. So we see more soil-produced CO2, displacing the atmospheric CO2. These are established relationships,” Myers said.

    “Our method can be used to infer relative levels of richness for areas where soils have been preserved, but where fossils are lacking because conditions were unsuitable for their preservation,” he said.

    The research demonstrates creative use of existing geological data, said co-author Tabor, an expert in ancient soil in SMU’s Roy M. Huffington Department of Earth Sciences.

    “Vertebrate paleontologists have been accumulating information about vertebrate fossils in the Jurassic for well over 100 years. In addition, geochemists have been systematically sampling the composition of ancient soils for several decades,” Tabor said. “In these respects, the data that are the foundation of this study are not extraordinary. What is remarkable, though, is combining the paleontology and geochemistry data to answer large-scale questions that extend beyond the data points — specifically, to answer questions about ancient ecosystems.”

    Data from Morrison Formation, Central Africa and Portugal
    Myers tested Upper Jurassic soil nodules collected from the Morrison Formation in the western United States. The formation extends from Montana to New Mexico and has been the source of many dinosaur fossil discoveries.

    He also analyzed Upper Jurassic soil nodules from Portugal, another location well-sampled for dinosaur fossils. The region’s paleoclimate was broadly similar to that of the Morrison Formation.

    In addition, Myers tested a small Upper Jurassic core sample from Central Africa, where there’s no evidence of any major terrestrial life. Unique minerals in the rocks indicate that the region had an arid environment during the Late Jurassic.

    Based on their hypothesis, the researchers expected to see regional variations in plant productivity — the amount of new growth produced in an area over time, which is an indirect measure of the amount of plant life in an environment. Forests, savannas and deserts all have different amounts of plant productivity, although those specific ecosystems can’t be identified on the basis of plant productivity alone.

    The researchers expected to see higher plant productivity for Portugal than for the Morrison Formation, with the lowest productivity in Central Africa.

    “Essentially that’s what we found,” Myers said. “We understand it’s tenuous and not a trend, but few places in the world are well-sampled. However, it’s still a useful tool for places where all we have are the soil nodules, without well-preserved fauna.”

    Soil nodules are fairly common, Myers said. They form as a result of seasonally dry conditions and may be preserved in all but the wettest environments. Since they harden into mineralized clods, they are easy to spot and sample as they weather out of ancient soil profiles.

    CO2 in ancient calcite nodules offers key to ancient climate
    From the analysis scientists can draw a more complete picture of the ancient landscape and climate in which prehistoric animals lived.

    “The Jurassic is thought of as very warm, very wet, with lots of dinosaurs,” said Myers, research curator for SMU’s Shuler Museum of Paleontology. “But we see from our analysis that there was regional variability during the Late Jurassic in the climate and in the abundance of animals across the planet.”

    The Late Jurassic extended from 160 million years ago to 145 million years ago. — Margaret Allen

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    SMU is a nationally ranked private university in Dallas founded 100 years ago. Today, SMU enrolls nearly 11,000 students who benefit from the academic opportunities and international reach of seven degree-granting schools. For more information see www.smu.edu.

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    Earth & Climate Fossils & Ruins Plants & Animals Slideshows Videos

    100 million-year-old coelacanth discovered in Texas is new fish species from Cretaceous

    Species is now the youngest coelacanth from Texas; fish jaw and cranial material indicate a new family — Dipluridae — that was evolutionary transition between two previously known families

    A new species of coelacanth fish has been discovered in Texas.

    Pieces of tiny fossil skull found in Fort Worth have been identified as 100 million-year-old coelacanth bones, according to paleontologist John F. Graf, Southern Methodist University, Dallas.

    The coelacanth has one of the longest lineages — 400 million years — of any animal. It is the fish most closely related to vertebrates, including humans.

    The SMU specimen is the first coelacanth in Texas from the Cretaceous, said Graf, who identified the fossil. The Cretaceous geologic period extended from 146 million years ago to 66 million years ago.

    Graf named the new coelacanth species Reidus hilli.

    Coelacanths have been found on nearly every continent
    Reidus hilli is now the youngest coelacanth identified in the Lone Star State.

    Previously the youngest was a 200 million-year-old coelacanth from the Triassic. Reidus hilli is the first coelacanth ever identified from the Dallas-Fort Worth area.

    Coelacanth fossils have been found on every continent except Antarctica. Few have been found in Texas, Graf said.

    The coelacanth fish has eluded extinction for 400 million years. Scientists estimate the coelacanth reached its maximum diversity during the Triassic.

    The coelacanth was thought to have gone extinct about 70 million years ago. That changed, however, when the fish rose to fame in 1938 after live specimens were caught off the coast of Africa. Today coelacanths can be found swimming in the depths of the Indian Ocean.

    Chart courtesy of the British Geological Survey.


    Closest living fish to all vertebrates alive on land
    “These animals have one of the longest lineages of any vertebrates that we know,” Graf said.

    The SMU specimen demonstrates there was greater diversity among coelacanths during the Cretaceous than previously known.

    “What makes the coelacanth interesting is that they are literally the closest living fish to all the vertebrates that are living on land,” he said. “They share the most recent common ancestor with all of terrestrial vertebrates.”

    Coelacanths have boney support in their fins, which is the predecessor to true limbs.

    “Boney support in the fins allows a marine vertebrate to lift itself upright off the sea floor,” Graf said, “which would eventually lead to animals being able to come up on land.”

    Texas coelacanth, Reidus hilli, represents a new species and a new family
    Graf identified Reidus hilli from a partial skull, including gular plates, which are bones that line the underside of the jaw.

    “Coelacanths are not the only fish that have gular plates, but they are one of the few that do,” Graf said. “In fact, the lenticular shape of these gular plates is unique to coelacanths. That was the first indicator that we had a fossil coelacanth.”

    Reidus hilli was an adult fish of average size for the time in which it lived, said Graf. While modern coelacanths can grow as large as 3 meters, Reidus hilli was probably no longer than 40 centimeters. Its tiny skull is 45 millimeters long by 26 millimeters wide, or about 1.75 inches long by 1 inch wide.

    Reidus hilli’s total body size is typical of the new family of coelacanths, Dipluridae, which Graf describes and names. He chose the name for the least primitive coelacanth in the family, Diplurus, which lived during the Triassic.

    Reidus hilli helped me tie a group of coelacanths together into what I identify as a new family of coelacanths,” he said. “This family represents a transition between the two large groups of youngest living coelacanths from the fossil record, Mawsoniidae and Latimeriidae.”

    Diplurid coelacanths are typically smaller than the two families with which they are most closely associated, Mawsoniidae and Latimeriidae. Mawsoniidae and Latimeriidae both have late Cretaceous members reaching large body sizes, ranging from 1 meter to 3 meters in total body length, Graf said.

    Reidus hilli provides clues to missing coelacanth history
    Reidus hilli is named, in part, for the amateur collector who discovered the fish, Robert R. Reid.

    A Fort Worth resident, Reid has collected fossils for decades. He found the fossil specimen while walking some land that had been prepared for construction of new homes. Reid noticed the fossil lying loose on the ground in a washed out gully created by run-off.

    Following Graf’s analysis, Reid was surprised to learn he’d collected a coelacanth — and a new species.

    “When I found it, I could tell it was a bone but I didn’t think it was anything special,” said Reid, recalling the discovery. “I certainly didn’t think it was a coelacanth.”

    At the time, SMU paleontologist Louis L. Jacobs recommended to Reid that he donate the fossil and have it scientifically identified. Reid gave the fossil to SMU’s Shuler Museum of Paleontology in the Roy M. Huffington Department of Earth Sciences.

    “It is astounding what can be learned from the discoveries that people like Rob Reid make in their own backyards,” said Jacobs, an SMU professor of earth sciences and president of SMU’s Institute for the Study of Earth and Man. “The discovery of living coelacanths in the Indian Ocean after being presumed extinct for 70 million years highlights one of the great mysteries of ocean life. Where were they all that time? The new fossil from Texas is a step toward understanding this fascinating history.”

    Reidus hilli is the latest of many fossils Reid has discovered. Others also have been named for him.

    Reidus hilli discovered in Duck Creek Formation of North Texas
    Reidus hilli came from the fossil-rich Duck Creek Formation, which is a layer-cake band of limestone and shale about 40 feet thick.

    The fossil was found in marine sediments, Graf said. It is one of many marine fossils found in the North Texas area, which 100 million years ago was covered by the Western Interior Seaway that divided North America from the Gulf of Mexico to the Arctic Ocean.

    “That is unique to younger coelacanths,” Graf said. “The oldest coelacanths were usually found in freshwater deposits and it wasn’t until the Cretaceous that we start seeing this transition into a more marine environment.”

    Fossil also named for Robert T. Hill, “Father of Texas Geology”
    Graf also named the fossil for Robert T. Hill, a geologist with the U.S. Geological Survey who led surveys of Texas during the 1800s. Hill described much of the geology of Texas, including the Duck Creek Formation. Hill is acclaimed as the “Father of Texas Geology.”

    Identification of Reidus hilli brings the number of coelacanth species worldwide to 81, including two that are alive today. Sources report that 229 living coelacanths have been caught since 1938.

    Graf reported his findings in “A new Early Cretaceous coelacanth from Texas,” published in Historical Biology: An International Journal of Paleobiology. Graf is a paleontology graduate student in SMU’s Huffington Department of Earth Sciences. — Margaret Allen

    Follow SMU Research on Twitter, @smuresearch.

    For more SMU research see www.smuresearch.com.

    SMU is a nationally ranked private university in Dallas founded 100 years ago. Today, SMU enrolls nearly 11,000 students who benefit from the academic opportunities and international reach of seven degree-granting schools. For more information, www.smu.edu.

    SMU has an uplink facility located on campus for live TV, radio, or online interviews. To speak with an SMU expert or book an SMU guest in the studio, call SMU News & Communications at 214-768-7650.

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    Earth & Climate Fossils & Ruins Videos

    Texas frontier scientists who uncovered state’s fossil history had role in epic Bone Wars


    Treasure trove of archived letters discovered at SMU; Permian hunter’s German ode to a fossil is translated into English

    In the late 1800s, a flurry of fossil speculation across the American West escalated into a high-profile national feud called the Bone Wars.

    Drawn into the spectacle were two scientists from the Lone Star State, geologist Robert T. Hill, now acclaimed as the Father of Texas Geology, and naturalist Jacob Boll, who made many of the state’s earliest fossil discoveries.

    Hill and Boll had supporting roles in the Bone Wars through their work for one of the feud’s antagonists, Edward Drinker Cope, according to a new study by vertebrate paleontologist Louis L. Jacobs, Southern Methodist University, Dallas.

    The study by Jacobs expands knowledge about Cope’s work with Hill and Boll.

    It also unveils new details about the Bone Wars in Texas that Jacobs deciphered from 13 letters written by Cope to Hill. Jacobs discovered the letters in an archive of Hill’s papers at SMU’s DeGolyer Library. The letters span seven years, from 1887 to 1894.

    Hill, who worked for the U.S. Geological Survey, not only provided Cope with fossils of interest but also shared geological information about fossil locales.

    Boll, who was a paid collector for Cope — as was the practice at the time — supplied the well-known paleontologist with many fossils from Texas. More than 30 of the taxa ultimately named by Cope were fossils collected by Boll.

    “Fossils collected by Boll and studied by Cope have become some of the most significant icons in paleontology,” said Jacobs, an SMU professor of earth sciences and president of SMU’s Institute for the Study of Earth and Man.

    The survey party of USGS geologist Robert T. Hill explored Texas during the 1800s to report on the geology and resources to open the West to agriculture. (Credit: USGS)

    Jacobs’ study, “Jacob Boll, Robert T. Hill, and the Early History of Vertebrate Paleontology in Texas,” is published in the journal Historical Biology as part of the conference volume of the 12th International Symposium on Early Vertebrates/Lower Vertebrates.

    Rush to find fossils explodes during opening of the American West
    Jacobs describes the late 1800s as a period of intense fossil collecting. The Bone Wars were financed and driven by Cope and his archenemy, Othniel Charles Marsh. The two were giants of paleontology whose public feud brought the discovery of dinosaur fossils to the forefront of the American psyche.

    Cope, from Philadelphia, and Marsh, from Yale University, began their scientific quests as a friendly endeavor to discover fossils. They each prospected the American frontier and also hired collectors to supply them with specimens. Cope and Marsh identified and named hundreds of discoveries, publishing their results in scientific journals.

    Over the course of nearly three decades, however, their competition evolved into a costly, self-destructive, vicious all-out war to see who could outdo the other. Despite their aggressive and sometimes unethical tactics to outwit one another and steal each other’s hired collectors, Cope and Marsh made major contributions to the field of paleontology, Jacobs said.

    Hill first to identify and map the Cretaceous geology in North Texas
    Born in 1858, Hill was a teenager when he left Tennessee as an orphan and arrived on the Texas frontier in 1874, says Jacobs’ study. Hill settled in Comanche, southwest of Fort Worth, where he went to work for his brother’s newspaper, the Chief. After earning a Bachelor of Science in geology from Cornell, Hill was hired as a field geologist for the USGS.

    Hill is noted for being the first to identify and map the distinct rock formations in North Texas that correspond to the Earth’s Cretaceous geologic period from 146 million years ago to 65 million years ago, Jacobs said. For much of the Cretaceous, a shallow sea cut North America in half from the Arctic to the Gulf of Mexico. Dinosaurs roamed the coastal shoreline and huge reptiles swam the waters, an environment that preserved plants and animals as fossils for posterity millions of years later.

    Through his reading of the letters, Jacobs found that Cope disagreed with the way Hill named the Cretaceous rock units, and told him so. Cope counseled Hill: “You mustn’t mind criticism. We all get it and get used to it; but it isn’t comfortable at first.”

    In subsequent letters, said Jacobs, it’s apparent Hill had changed his approach, for which Cope offered him high praise: “I wish to say definitely that your discovery of the lower Cretaceous series in this country is the most important addition to our geology that has been heard for a long time.”

    Hill contributed one of 1,000 species of backboned animals named by Cope
    Jacobs’ research found that numerous letters reveal that Cope was persistent in trying to buy a Cretaceous fish fossil that Hill had collected. In various letters, Cope expresses a desire to view the fossil, each time stating his request in a different way. Hill ultimately sold Cope the fossil for $15. Cope named the specimen Macrepistius arenatus. It is housed at the American Museum of Natural History in New York City.

    Hill’s fish specimen was one of 1,000 species of backboned animals, from fish to dinosaurs, that Cope described and named in his lifetime.

    Also evident in the correspondence is a glimpse into the battle intrigue between Cope and Marsh, Jacobs said. In one letter, Cope angles to learn from Hill details about a new director of the USGS, to judge whether “our ? friend O.C.M.” would have an advantage.

    Cope wrote to Hill, “Possibly you can find out how the land lies?”

    Cope’s other Texas connection was through Jacob Boll
    Boll was a much larger supplier to Cope and ultimately made significant contributions to the field of paleontology. Boll “is mentioned, usually in passing, in virtually every history of the subject,” according to Jacobs.

    Born in 1828 in Switzerland, Boll was the first to discover vertebrate fossils in the Permian red beds along the drainages of the Wichita and Red rivers and their tributaries.

    “The discoveries opened up an entirely new chapter in vertebrate evolution some 280 million years old,” Jacobs said. “Boll’s finds include some of the oldest close relatives of mammals whose evolution eventually led to humans.”

    Boll belonged to one of the Swiss families that founded the mid-19th century utopian society La Reunion in Dallas, Jacobs said. Boll made Dallas his home sometime after 1874. He died in the field in the Permian red beds in 1880 from a snake bite.

    At least one scholar has asserted that Cope — to keep the identity of his collectors secret from Marsh — never credited Boll for the Texan’s many fossil discoveries. Jacobs, however, found evidence that in 1878 Cope, in fact, did acknowledge Boll’s contribution, at least for the big-headed, semi-acquatic amphibian Eryops. Cope wrote that the fossil was “found … by my friend Jacob Boll.”

    Boll’s fossil fascination erupted into a poem for Eryops
    During a break in his field labors, Boll’s fascination with ancient bones prompted him to write in his native German an ode to fossils. Jacobs came across the poem in the American Museum of Natural History on a label on the back of Eryops specimen No. AMNH 4183.

    SMU biology professor Pia Vogel translated the poem. Vogel and Jacobs worked with SMU English professor John M. Lewis to retain the essence of the poem in English.

    “Now you will with some few others
    Trek to the professor’s seat.
    Awakened through his careful thought,
    Be reassembled from your fragments,
    To tell to others yet to come
    From the sculpting of your teeth
    How you lived and disappeared,
    Name you he will, and what he found.”

    While Hill and Boll were linked by their relationship to Cope, it isn’t known whether the two of them ever met, according to Jacobs.

    ”Hill and Boll both made major contributions to frontier science at an important time in American history,” Jacobs said. “They may have been nearly forgotten, but their lives have influenced much that came later.” — Margaret Allen

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    Health & Medicine Technology Videos

    Moving 3D computer model of key human protein is powerful new tool in fight against cancer

    Powerful discovery tool is at work screening millions of drugs in the search to reverse chemotherapy drug resistance in cancer

    A picture is worth 1,000 words when it comes to understanding how things work, but 3D moving pictures are even better. That’s especially true for scientists trying to stop cancer by better understanding the proteins that make some chemotherapies unsuccessful.

    Researchers for decades have had to rely at best on static images of the key proteins related to recurring cancers.

    Now SMU biochemist John G. Wise at Southern Methodist University, Dallas, has brought to life in a moving 3D computer model the structure of human P-glycoprotein, which is thought to contribute to the failure of chemotherapy in many recurring cancers.

    “This is a very different approach than has been used historically in the field of protein structure biochemistry,” Wise said. “Historically, proteins are very often viewed as static images, even though we know that in reality these proteins move and are dynamic.”

    The model is a powerful new discovery tool, says Wise, particularly when combined with high-performance supercomputing. The dynamic 3D model already has made it possible for Wise to virtually screen more than 8 million potential drug compounds in the quest to find one that will help stop chemotherapy failure. (Youtube video) (Flickr images)

    So far, the supercomputer search has turned up a few hundred drugs that show promise, and Wise and SMU biochemist Pia Vogel have begun testing some of those compounds in their wet lab at SMU.

    “This has been a good proof-of-principle,” said Wise, a research associate professor in the SMU Department of Biological Sciences.

    “We’ve seen that running the compounds through the computational model is an effective way to rapidly and economically screen massive numbers of compounds to find a small number that can then be tested in the wet lab.”

    Wise describes his research findings in Biochemistry in the article “Catalytic Transitions in the Human MDR1 P-Glycoprotein Drug Binding Sites” online.

    The research is funded by the National Institute of General Medical Sciences, National Institutes of Health.

    Seeking new drugs that would allow chemotherapeutic compounds to enter and destroy cancer cells
    Since the 1970s it has been known that the so-called multidrug resistance protein, P-gp, is most likely responsible for the failure of many chemotherapy drugs. P-gp is nature’s way of pumping toxins from a cell, but if cancer cells express more P-gp than cells normally would, the chemotherapy is no longer effective because the protein considers it a toxin and pumps it out before it can destroy the cancer.

    “We’re looking for small molecules that will temporarily inhibit the pump; a new drug that could be co-administered with the chemotherapeutic and that stops the sump pump in the cancer cell so that the cancer chemotherapy can remain in the cell and kill the cancer,” Wise said.

    High-performance computer enables millions of digital screenings
    Wise has run about 10.5 million computational hours since August 2009 and has screened roughly 8 million potential drugs against different protein structures.

    SMU biochemists Pia Vogel and John Wise have paired a moving 3D computer model of a key human protein together with the SMU supercomputer to search for potential drugs to stop chemotherapy failure.
    (Image: Hillsman Jackson, SMU)

    “We are currently screening about 40,000 compounds per day on SMU’s High Performance Computer,” Wise said.

    “We found a couple hundred compounds that were interesting, and so far we chose about 30 of those to screen in the lab,” Vogel said. “From those, we found a handful of compounds that do inhibit the protein. We were thrilled. Now we’re going back into the models and looking for other compounds that might be able to throw a stick in the pump’s mechanism.”

    Massive increases in computational power in recent years have made the screening research possible, Wise said. “Ten years ago you couldn’t have docked 8 million compounds — there just wasn’t enough computational power.”

    Human P-gp: “We don’t know what it looks like exactly.”
    Every organism has a version of P-gp. Its structure has been previously determined for some organisms — mostly bacteria, but also in mice — by studying the arrangement of atoms within protein crystals. However, the exact structure of the human enzyme remains unclear. Wise deduced the structure of human P-gp by relying on evolutionary relationships and scientific understanding of how proteins are put together. He then used computer programs to model the protein in a way that brings the static picture of the human pump to life in the computer. (Youtube: Moving model)

    To develop the model, Wise used freely available simulation software developed by researchers at the University of Illinois, the National Institutes of Health and the Scripps Research Institute. Wise and Vogel use compounds from ZINC, a free database of more than 21 million commercially available compounds for virtual screening. ZINC is provided by the Department of Pharmaceutical Chemistry at the University of California, San Francisco.

    “We can physically build these molecules in the computer, in silico, and computationally we can model a variety of conditions: We can raise the temperature to 37 degrees Centigrade, we can have the right salts and all the right conditions, just like in a wet-lab experiment. We can watch them thermally move and we can watch them relax,” Wise said. “The software is good enough that the model will move according to the laws of physics and the principles of biochemistry. In this way we can see how these compounds interact with the protein in a dynamic way, not just in a snapshot way.”

    Even with the 3D dynamic model and a supercomputer, the odds are stiff
    Theoretically, if a drug can be found that temporarily knocks out the sump-pump proteins, then all those cancer chemotherapies that don’t work for a patient will work again.

    “The ultimate goal of our research would be to find a compound that is safe and effective,” Wise said. Even with a supercomputer, however, the odds are steep.

    “Out of a hundred good inhibitors that we might find, 99 of them might be extremely toxic and can’t be used. In the pharmaceutical industry there are many, many candidates that fall by the wayside for one reason or another,” he said. “They metabolize too quickly, or they’re too toxic, or they’re not soluble enough in the acceptable solvents for humans. There are many different reasons why a drug can fail. Finding a handful has been a great confirmation that we’re on the right track, but I would be totally amazed if one of the first we’ve tested was the one we’re looking for.”

    Vogel is an associate professor and director of SMU’s Center for Drug Discovery, Design and Delivery. CD4 was launched by SMU’s Biological Sciences and Chemistry departments and has as its mission the search for new drug therapies and delivery methods that can be developed into clinical applications. — Margaret Allen

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    Human diabetes has new research tool: Overfed fruit flies that develop insulin resistance

    Researchers find that fruit flies overloading on carbs and protein not only gain weight but have shortened life spans — and develop insulin resistance, a hallmark of Type 2 human diabetes

    With Type 2 human diabetes climbing at alarming rates in the United States, researchers are seeking treatments for the disease, which has been linked to obesity and poor diet.

    Now biologists at Southern Methodist University, Dallas, report they have developed a new tool that will help researchers better understand this deadly disease.

    By manipulating the diets of healthy adult fruit flies, the researchers developed flies that are insulin-resistant, a hallmark of Type 2 diabetes.

    Until now, researchers largely have relied on rats, mice and other animals as model systems for exploring the metabolic and genetic changes that take place in diabetics.

    A dye test in fruit flies uncovers whether fat cells are responding to insulin. On the left, insulin signaling is active. On the right, insulin signaling is inactive. (Credit: Bauer, SMU)

    The fruit fly Drosophila melanogaster has been widely deployed in labs to investigate a wide range of human diseases, from Alzheimer’s to cancer. But the scientific literature hasn’t documented use of the adult fruit fly for studying the metabolic disruptions that are the hallmark of Type 2 diabetes. The fruit fly’s advantages include its low cost and a very short lifespan, both of which enable scientists to undertake rapid screenings in their search for new genetic and drug treatments.

    The insulin-resistant fruit fly was developed in the lab of SMU biologist Johannes H. Bauer, principal investigator for the study. It was accomplished by feeding fruit flies a diet high in nutrients, said Bauer, an assistant professor in SMU’s Department of Biological Sciences. That process mimics one of the ways insulin resistance develops in humans — overeating to the point of obesity.

    The lab’s insulin-resistant fruit flies now can serve as a highly relevant and efficient model for studying Type 2 diabetes.

    “We learned that by manipulating the nutrients of fruit flies, we can make them insulin resistant,” Bauer said. “With this insulin-resistant model we can now go in with pinpoint precision and study the molecular mechanisms of insulin resistance, as well as drug treatments for the condition, as well as how to treat obesity, how to block insulin resistance and how metabolic changes from a specific diet develop. The possibilities are endless.”

    The researchers reported their findings in the article “Development of diet-induced insulin resistance in adult Drosophila melanogaster,” published in Biochimica et Biophysica Acta – Molecular Basis of Disease.

    Two overfeeding diets, carb and protein, both result in insulin resistance
    Insulin, produced by the pancreas, is the hormone that tells our cells to absorb glucose, a necessary sugar molecule that provides our body, particularly the brain, with the energy to function, make repairs, move and grow.

    In Type 2 diabetes, a person is insulin-resistant because his or her cells fail to respond to insulin’s signal to absorb glucose. The disregulation of glucose upsets the body’s delicate internal equilibrium, causing massive disruptions in normal cellular processes. These interruptions manifest in multiple disease symptoms, making Type 2 diabetes difficult to characterize, treat and cure.

    To provide a good base model organism to study aspects of this complex disease, researchers in the Bauer lab wanted to determine whether flies develop diabetes-like metabolic changes when fed different diets. The researchers developed the insulin-resistant flies in two different ways: One group of fruit flies was overfed a carbohydrate-loaded diet; a second group of flies was overfed a protein-loaded diet. In both cases, the disruption had a profoundly detrimental effect on the flies’ health and physiology.

    SMU biologist Siti Nur Sarah Morris, lead author on the study, said the results the researchers observed were both expected and unexpected. The researchers expected the flies to gain weight, which they did. Carb-loaded flies gained excessive weight and got fat, just like humans who overeat sweets, french fries, pasta and ice cream. Protein-loaded flies also gained weight, but upon extreme overfeeding they lost weight, just like humans who follow the popular Atkins Diet, a weight loss program in which participants eat only meat, seafood and eggs.

    The researchers expected the carb-loaded fruit flies to develop insulin resistance, which they did.

    In a surprising result, however, the fruit flies that overate protein also developed insulin resistance, but at a quicker and more severe rate.

    “Carb-loaded flies gain weight. Protein-loaded flies gain and then lose weight. So the two diets have exactly opposite effects on metabolism,” Bauer said. “But too much of either one of them causes insulin resistance. That surprised us.”

    Overfed flies had shortened lifespans, differences in fertility
    In other findings, carb-loaded flies experienced a profound decline in egg-laying, a measurement of fertility. In contrast, protein-loaded flies first experienced increased egg-laying, but the extreme diet led to decreased egg laying. Both diets led to shortened longevity, the scientists reported.

    “The high-protein flies looked frail and unhealthy. They moved less, almost as if sedated,” Morris said. “The fatter flies on the high-carb diet had massively decreased fertility; they flew less but still tried to move.”

    While both diets resulted in insulin resistance, differences were remarkable.

    “The carb data imply a linear relationship between carb levels and health. The more carbs, the more weight, the more sugar storage and fat, the more insulin resistance and the less fertility,” Bauer said. “But with protein, this relationship becomes parabolic, meaning all readouts go up, then come down again. The decreased storage we liken to a catabolic state that is primarily destructive for the body’s optimum metabolic functioning, such as the ketosis typically seen in people eating Atkins-type diets.”

    Besides Morris and Bauer, other authors on the study were SMU students Claire Coogan, Khalil Chamseddin and Santharam Kolli. Other co-authors, from Pennington Biomedical Research Center, Baton Rouge, La., are Jeffrey N. Keller, director, Institute of Dementia Research & Prevention, and Sun Ok Fernandez-Kim. The research was funded by the National Institute on Aging. — Margaret Allen

    SMU is a nationally ranked private university in Dallas founded 100 years ago. Today, SMU enrolls nearly 11,000 students who benefit from the academic opportunities and international reach of seven degree-granting schools. For more information see www.smu.edu.

    SMU has an uplink facility located on campus for live TV, radio, or online interviews. To speak with an SMU expert or book an SMU guest in the studio, call SMU News & Communications at 214-768-7650.

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    Ancient tree-ring records from southwest U.S. suggest today’s megafires are truly unusual

    Unprecedented study relies on more than 1,500 years of tree-ring data and hundreds of years of fire-scar records gathered from Ponderosa Pine forests

    Today’s mega forest fires of the southwestern U.S. are truly unusual and exceptional in the long-term record, suggests a new study that examined hundreds of years of ancient tree ring and fire data from two distinct climate periods.

    Researchers constructed and analyzed a statistical model that encompassed 1,500 years of climate and fire patterns to test, in part, whether today’s dry, hot climate alone is causing the megafires that routinely destroy millions of acres of forest, according to study co-author and fire anthropologist Christopher I. Roos, Southern Methodist University, Dallas.

    The researchers found that even when ancient climates varied from each other — one hotter and drier and the other cooler and wetter — the frequencies of year-to-year weather patterns that drive fire activity were similar.

    The findings suggest that today’s megafires, at least in the southwestern U.S., are atypical, according to Roos and co-author Thomas W. Swetnam, the University of Arizona. Furthermore, the findings implicate as the cause not only modern climate change, but also human activity over the last century, the researchers said.

    “The U.S. would not be experiencing massive large-canopy-killing crown fires today if human activities had not begun to suppress the low-severity surface fires that were so common more than a century ago,” said Roos, an assistant professor in the SMU Department of Anthropology.

    Today’s extreme droughts caused by climate change probably would not cause megafires if not for a century of livestock grazing and firefighting, which have combined to create more dense forests with accumulated logs and other fuels that now make them more vulnerable than ever to extreme droughts. One answer to today’s megafires might be changes in fire management.

    “If anything, what climate change reminds us is that it’s pretty urgent that we deal with the structural problems in the forests. The forests may be equipped to handle the climate change, but not in the condition that they’re currently in. They haven’t been in that condition before,” Roos said.

    Roos and Swetnam, director of the University of Arizona Laboratory of Tree-Ring Research, published their findings in the scientific journal The Holocene.

    Study combines fire-scar records and tree-ring data of U.S. southwest
    This new study is based on a first-of-its-kind analysis that combined fire-scar records and tree-ring data for Ponderosa Pine forests in the southwest United States.

    Earlier research by other scientists has looked at forest fire records spanning the years from 1600 to the mid-1800s — a climate period known as the Little Ice Age — to understand current forest fire behavior. Those studies have found that fires during the Little Ice Age occurred frequently in the grasses and downed needles on the surface of the forest floor, but stayed on the floor and didn’t burn into the canopies.

    Critics dispute the relevance of the Little Ice Age, however, saying the climate then was cooler and wetter than the climate now. They say a better comparison is A.D. 800 to 1300, known as the Medieval Warm Period, when the climate was hotter and drier, like today’s.

    Scientists who favor that comparison hypothesize that forest fires during the Medieval Warm Period probably were similar to today’s megafires and probably more destructive than during the Little Ice Age.

    Tree rings and fire scars provide the evidence for moisture, drought and burn activity
    Scientists rely on tree rings not only to calculate a tree’s age, but also to determine wet and dry weather patterns of moisture and drought. Similarly, scientists’ best evidence for fire activity is the scarring on tree rings that dates the occurrence of fires. While tree-ring data for climate are available for long time periods, annual forest fire records don’t yet exist for the Medieval Warm Period.

    In response to the need for data, Roos and Swetnam tested the Medieval Warm Period hypothesis by calibrating a statistical model that combined 200 years of Little Ice Age fire-scar data and nearly 1,500 years of climate data derived from existing tree rings. With that they were able to predict what the annual fire activity would have been almost 1,500 years ago.

    They discovered that the Medieval Warm Period was no different from the Little Ice Age in terms of what drives frequent low-severity surface fires: year-to-year moisture patterns.

    “It’s true that global warming is increasing the magnitude of the droughts we’re facing, but droughts were even more severe during the Medieval Warm Period,” Roos said. “It turns out that what’s driving the frequency of surface fires is having a couple wet years that allow grasses to grow continuously across the forest floor and then a dry year in which they can burn. We found a really strong statistical relationship between two or more wet years followed by a dry year, which produced lots of fires.”

    Modeling of tree-ring and fire-scar data can be applied to any locale
    The research, “A 1416-year reconstruction of annual, multidecadal, and centennial variability in area burned for ponderosa pine forests of the southern Colorado Plateau region, Southwest USA,” was funded by the International Arid Lands Consortium.

    “The best way to look at how fires may have varied — if climate were the only driver — is to do this type of modeling,” Roos said. “Our study is the first in the world to go this far back using this methodology. But this method can be used anyplace for which there is a fire-scar record.”

    The study’s tree-ring-derived climate data are from the southern Colorado Plateau, a region that includes the world’s largest continuous stand of Ponderosa Pine stretching from Flagstaff, Ariz., into New Mexico. Large Ponderosa Pine forests have existed in the area for more than 10,000 years.

    Fire-scar data for the region go back as far as the 1500s, but are most prevalent during the Little Ice Age period. Fire scientists have analyzed fire-scars from hundreds of trees from more than 100 locations across the Southwest. All fire-scar data are publically available through the International Multiproxy Paleofire Database, maintained by the federal National Oceanic and Atmospheric Administration’s paleoclimatology program.

    Ancient fires were frequent, but didn’t burn the forest canopy
    Fire scientists know that in ancient forests, frequent fires swept the forest floor, often sparked by lightning. Many of the fires were small, less than a few dozen acres. Other fires may have been quite large, covering tens of thousands of acres before being extinguished naturally. Fuel for the fires included grass, small trees, brush, bark, pine needles and fallen limbs on the ground.

    “The fires cleaned up the understory, kept it very open, and made it resilient to climate changes because even if there was a really severe drought, there weren’t the big explosive fires that burn through the canopy because there were no fuels to take it up there,” Roos said. “The trees had adapted to frequent surface fires, and adult trees didn’t die from massive fire events because the fires burned on the surface and not in the canopy.”

    Today’s huge canopy fires are the cumulative result of human activity
    The ancient pattern of generally small, frequent fires changed by the late 1800s. The transcontinental railroad had pushed West, bringing farmers, ranchers, cattle and sheep. Those animals grazed the forest floor, consuming the grasses that fueled small fires but leaving small saplings and brush, which then grew up into dense, mature bushes and trees. In addition, the U.S. began to restrict the traditional land use of the region’s Native American communities, including confining them to reservations. This removed another source for frequent surface fires in the forests — burning by Native Americans for horticulture and hunting.

    By the early 20th century, the U.S. Forest Service had been established, and fighting fires was a key part of the agency’s mission. Without continuous fuel, fires on the forest floor ceased.

    “Many of our modern forests in central Arizona and New Mexico haven’t had a fire of any kind on them in 130 or 140 years,” Roos said. “That’s very different from the records of the ancient forests. The longest they would have gone without fires was 40 or 50 years, and even that length of time would have been exceptional.”

    The research reported in The Holocene is the basis for a new four-year, $1.5 million grant from the National Science Foundation in which Roos and Swetnam are co-principal investigators. That project will examine how human activities have changed forests and forest fires over the past 1,000 years of Native American occupation, as well as the influence of droughts during the Medieval Warm Period and Little Ice Age in New Mexico’s Jemez Mountains. — Margaret Allen

    SMU is a nationally ranked private university in Dallas founded 100 years ago. Today, SMU enrolls nearly 11,000 students who benefit from the academic opportunities and international reach of seven degree-granting schools. For more information see www.smuresearch.com.

    SMU has an uplink facility located on campus for live TV, radio, or online interviews. To speak with an SMU expert or book an SMU guest in the studio, call SMU News & Communications at 214-768-7650.

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    Dark matter search may turn up evidence of WIMPS: SMU Researcher Q&A

    Radioactivity interferes with our ability to observe dark matter. A banana would be more radioactive than the materials we use for our experiment. — Jodi Cooley

    The XIA Alpha Particle Counter sounds like it belongs in a science fiction movie. In reality it’s housed in a clean room operated by SMU’s Department of Physics, where SMU physicist Jodi Cooley and her students rely on it as part of their search for dark matter.

    Cooley is a member of the global scientific consortium called SuperCryogenic Dark Matter Search (SuperCDMS). SuperCDMS is searching for elusive dark matter — the “glue” that represents 85 percent of the matter in our universe but which has never been observed.

    SuperCDMS operates a particle detector in an underground abandoned mine in Minnesota. The detector is designed to capture a glimpse of WIMPS (Weakly Interacting Massive Particles), which some physicists theorize constitutes dark matter. WIMPS are particles of such low mass that they rarely interact with ordinary matter, making them extremely difficult to detect.

    Now SuperCDMS plans to build a larger and even more sensitive detector for deployment at SnoLab, an even deeper underground mine near Ontario, Canada. To prepare, Cooley’s team will advance analysis techniques and help determine ultra pure construction materials to increase the detector’s sensitivity to dark matter interactions.

    In testing materials, Cooley’s team measures how much radon or radioactivity occurs as background interference on a sample. SuperCDMS scientists try to minimize background interference to improve the chances of observing WIMPS.

    To assess background, Cooley and her team rely on the high-tech XIA Alpha Particle Counter. SMU is one of only five entities in the world to house the XIA.

    An assistant professor in the SMU Department of Physics, Cooley was recently recognized by the National Science Foundation with its prestigious Faculty Early Career Development Award. The NSF awarded Cooley a 5-year, $1 million research grant toward her SuperCDMS dark matter research. Students assisting in the XIA counting include Bedile Karabuga, doctoral student, and Mayisha Nakib, first year.

    What’s the importance of background?
    Cooley:
    For people who are older, they’ll remember back before digital TVs to analog TVs. Sometimes you’d turn to a channel and it would be fuzzy, so you’d play with the antenna, play with the contrast. That’s sort of the same thing going on in our detectors.

    We want our detectors to produce a clear image of dark matter. But we have a lot of background or static and fuzz getting in the way. So we have a bag of tricks for removing that static or fuzz to help us see if the dark matter interacts in our detectors.

    Just like the TV, we don’t want to start with a channel that’s completely snow, but a channel that’s sort of coming in. You want to reduce the background as much as possible. That’s what we’re doing with SuperCDMS. So the studies we’re doing are trying to reduce the background around the instrument by selecting ultra pure material with which to construct the instrument.

    The background is from radioactivity, cosmic rays, and just from the fact there are particles around us all the time. So we try to minimize them as much as possible. Even our finger essentially would introduce radioactivity onto our detectors.

    How important are ultra pure materials?
    Cooley:
    This is very critical. We’re looking for a very rare occurrence: dark matter interacting in these detectors. Radioactivity interferes with our ability to observe dark matter. The radioactivity in most materials is much higher than the rate of dark matter interactions. So we try to get the purest materials we can find. To describe how pure a material we’re seeking, it helps to know that a banana would be more radioactive. Touching the detectors with our fingers, because our fingers have potassium on them, would ruin the experiment. We’re looking for very trace levels of radioactivity in materials.

    To select the best, we try to count the rate of radioactive decays in materials. Our SuperCDMS collaboration has several types of counters, and different ways and techniques to calculate a material’s radioactivity. Here at SMU in the LUMINA Lab — Laboratory for Ultra Pure Material Isotope and Neutron Assessment — we have the XIA counter, which we’ve named Peruna.

    Where do neutrons enter the picture?
    Cooley:
    Neutrons are nearly impossible to distinguish from dark matter in our detectors. They also form background. My postdoctoral researcher Silvia Scorza and SMU graduate student Hang Qiu are both characterizing neutrons that come from the materials. That’s primarily done through simulations. So once we have rates of these types of interactions, we can generate through simulations what this would mean for the experiment. That helps us determine the right materials.

    How does the XIA work?
    Cooley:
    The instrument is essentially a drift chamber. We put a material sample on the surface of a tray in the chamber. An electric field goes through the instrument. When the charged particles give off radioactivity in the electric field they drift upward, and then we can measure the energy of the particles and the number of them from any given sample.

    Can that be challenging?
    Cooley:
    It’s not trivial. There are subtleties in the instrument. In trying to understand the data and trying to get an accurate count off certain types of materials such as plastics, we have to decide on certain conditions, like how long should the purging process last.

    Why is there more than one dark matter experiment in the world?
    Cooley:
    Dark matter is an important question and there are a variety of experiments using different techniques to solve the question. It’s not enough for one technique and one experiment to say they’ve made a discovery. It always has to be verified and looked at by another experiment, independently, with a different technique. If different techniques and different instruments prove the finding, then you can have a lot more confidence in the result. — Margaret Allen

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    SMU News: 2012 Research Day at Southern Methodist University